Hb_006614_020

Information

Type -
Description -
Location Contig6614: 22594-24454
Sequence    

Annotation

kegg
ID rcu:RCOM_1037900
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_012067937.1
description PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
swissprot
ID D4N501
description Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1
trembl
ID A0A067LBE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15841 PE=3 SV=1
Gene Ontology
ID GO:0016706
description probable 2-oxoglutarate fe -dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53015: 22547-24503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006614_020 0.0 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
2 Hb_000127_240 0.0500769093 - - SAUR39 [Populus tomentosa]
3 Hb_002030_010 0.0521498853 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
4 Hb_000375_220 0.0571274427 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
5 Hb_004128_150 0.059021314 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
6 Hb_007760_060 0.0625547277 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
7 Hb_004007_050 0.0748785845 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
8 Hb_003006_070 0.0775979239 - - aquaporin [Manihot esculenta]
9 Hb_007576_090 0.0801285386 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
10 Hb_180535_010 0.087259915 - - -
11 Hb_004453_160 0.0894511757 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003085_070 0.0911609092 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
13 Hb_000073_040 0.0926341947 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
14 Hb_007044_240 0.0936995056 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
15 Hb_009847_010 0.0937517035 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
16 Hb_000375_100 0.0943904589 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
17 Hb_011310_170 0.0977778759 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_000010_430 0.0981408381 - - Esterase precursor, putative [Ricinus communis]
19 Hb_072952_010 0.098197862 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
20 Hb_002307_140 0.098749061 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_006614_020 Hb_006614_020 Hb_000127_240 Hb_000127_240 Hb_006614_020--Hb_000127_240 Hb_002030_010 Hb_002030_010 Hb_006614_020--Hb_002030_010 Hb_000375_220 Hb_000375_220 Hb_006614_020--Hb_000375_220 Hb_004128_150 Hb_004128_150 Hb_006614_020--Hb_004128_150 Hb_007760_060 Hb_007760_060 Hb_006614_020--Hb_007760_060 Hb_004007_050 Hb_004007_050 Hb_006614_020--Hb_004007_050 Hb_000127_240--Hb_002030_010 Hb_000127_240--Hb_007760_060 Hb_000127_240--Hb_000375_220 Hb_007576_090 Hb_007576_090 Hb_000127_240--Hb_007576_090 Hb_180535_010 Hb_180535_010 Hb_000127_240--Hb_180535_010 Hb_002030_010--Hb_000375_220 Hb_002030_010--Hb_007760_060 Hb_009847_010 Hb_009847_010 Hb_002030_010--Hb_009847_010 Hb_003006_070 Hb_003006_070 Hb_002030_010--Hb_003006_070 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_000375_220--Hb_003006_070 Hb_000375_220--Hb_009847_010 Hb_004128_150--Hb_004007_050 Hb_023640_020 Hb_023640_020 Hb_004128_150--Hb_023640_020 Hb_011310_170 Hb_011310_170 Hb_004128_150--Hb_011310_170 Hb_001958_040 Hb_001958_040 Hb_004128_150--Hb_001958_040 Hb_004453_160 Hb_004453_160 Hb_004128_150--Hb_004453_160 Hb_000375_100 Hb_000375_100 Hb_007760_060--Hb_000375_100 Hb_007760_060--Hb_007576_090 Hb_000010_430 Hb_000010_430 Hb_007760_060--Hb_000010_430 Hb_007760_060--Hb_180535_010 Hb_072952_010 Hb_072952_010 Hb_007760_060--Hb_072952_010 Hb_004007_050--Hb_004453_160 Hb_004007_050--Hb_001958_040 Hb_004007_050--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_004007_050--Hb_000031_240 Hb_004007_050--Hb_011310_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.510095 68.3164 48.965 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.103921 0 0 15.6376

CAGE analysis