Hb_006615_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig6615: 10166-18187
Sequence    

Annotation

kegg
ID rcu:RCOM_1466780
description hypothetical protein
nr
ID XP_012080473.1
description PREDICTED: transcription factor BIM2 [Jatropha curcas]
swissprot
ID Q9CAA4
description Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1
trembl
ID A0A067K8R6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11784 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor bim2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53016: 13269-18160 , PASA_asmbl_53017: 17319-17467 , PASA_asmbl_53018: 16941-17065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_020 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
2 Hb_001902_140 0.0724278095 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
3 Hb_000185_030 0.0727593121 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
4 Hb_000015_040 0.0728936518 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
5 Hb_000840_250 0.0736490108 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
6 Hb_001507_040 0.0800206498 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001633_210 0.0807505412 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
8 Hb_029584_050 0.0822734439 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
9 Hb_000679_010 0.0822975731 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
10 Hb_002481_080 0.0835490347 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
11 Hb_003050_220 0.0844763696 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
12 Hb_000030_030 0.0847322382 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
13 Hb_002830_030 0.0847686232 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
14 Hb_007416_320 0.0848397837 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000069_420 0.0857398458 - - Beclin-1, putative [Ricinus communis]
16 Hb_000061_460 0.0869384943 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
17 Hb_003761_010 0.0874679251 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_000645_090 0.0876503798 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000710_060 0.0877649894 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
20 Hb_001014_030 0.0881294407 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006615_020 Hb_006615_020 Hb_001902_140 Hb_001902_140 Hb_006615_020--Hb_001902_140 Hb_000185_030 Hb_000185_030 Hb_006615_020--Hb_000185_030 Hb_000015_040 Hb_000015_040 Hb_006615_020--Hb_000015_040 Hb_000840_250 Hb_000840_250 Hb_006615_020--Hb_000840_250 Hb_001507_040 Hb_001507_040 Hb_006615_020--Hb_001507_040 Hb_001633_210 Hb_001633_210 Hb_006615_020--Hb_001633_210 Hb_000703_350 Hb_000703_350 Hb_001902_140--Hb_000703_350 Hb_003050_220 Hb_003050_220 Hb_001902_140--Hb_003050_220 Hb_006420_080 Hb_006420_080 Hb_001902_140--Hb_006420_080 Hb_032202_190 Hb_032202_190 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_000297_010 Hb_000297_010 Hb_000185_030--Hb_000297_010 Hb_000710_060 Hb_000710_060 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000185_030--Hb_000840_250 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_001579_220 Hb_001579_220 Hb_000015_040--Hb_001579_220 Hb_000015_040--Hb_003050_220 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_000015_040--Hb_003761_010 Hb_000840_250--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_000840_250--Hb_000614_250 Hb_000840_250--Hb_000297_010 Hb_001014_030 Hb_001014_030 Hb_000840_250--Hb_001014_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390 Hb_020805_130 Hb_020805_130 Hb_001507_040--Hb_020805_130 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_001633_210--Hb_000614_250 Hb_001633_210--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6163 26.2142 16.8265 23.6678 22.8111 22.2479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.1194 32.9196 46.0158 33.594 17.4278

CAGE analysis