Hb_006615_030

Information

Type -
Description -
Location Contig6615: 13323-24859
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14760g
description hypothetical protein
nr
ID XP_006378520.1
description prolyl oligopeptidase family protein [Populus trichocarpa]
swissprot
ID P24555
description Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2
trembl
ID U5G4E5
description Prolyl oligopeptidase family protein OS=Populus trichocarpa GN=POPTR_0010s14760g PE=4 SV=1
Gene Ontology
ID GO:0008236
description prolyl endopeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53020: 19188-20100 , PASA_asmbl_53021: 20973-22761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_030 0.0 - - prolyl oligopeptidase family protein [Populus trichocarpa]
2 Hb_002248_130 0.075155209 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
3 Hb_003992_180 0.076998307 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
4 Hb_003895_020 0.0848482914 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
5 Hb_000179_190 0.0880679809 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
6 Hb_001911_010 0.0887949852 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_001410_130 0.0897309842 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
8 Hb_004526_010 0.0916604869 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
9 Hb_011249_060 0.0932327049 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
10 Hb_000110_350 0.0934578663 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
11 Hb_004319_050 0.093504373 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
12 Hb_003540_250 0.0944763666 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
13 Hb_030545_030 0.0946051479 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
14 Hb_033152_090 0.0955443622 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
15 Hb_000866_080 0.0962914664 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
16 Hb_005403_010 0.0977535461 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
17 Hb_009302_030 0.0982880591 - - hypothetical protein RCOM_1176340 [Ricinus communis]
18 Hb_002056_100 0.0988313901 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
19 Hb_005288_140 0.0997376194 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
20 Hb_002903_140 0.1007962462 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]

Gene co-expression network

sample Hb_006615_030 Hb_006615_030 Hb_002248_130 Hb_002248_130 Hb_006615_030--Hb_002248_130 Hb_003992_180 Hb_003992_180 Hb_006615_030--Hb_003992_180 Hb_003895_020 Hb_003895_020 Hb_006615_030--Hb_003895_020 Hb_000179_190 Hb_000179_190 Hb_006615_030--Hb_000179_190 Hb_001911_010 Hb_001911_010 Hb_006615_030--Hb_001911_010 Hb_001410_130 Hb_001410_130 Hb_006615_030--Hb_001410_130 Hb_003540_250 Hb_003540_250 Hb_002248_130--Hb_003540_250 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_002248_130--Hb_000179_190 Hb_017214_040 Hb_017214_040 Hb_002248_130--Hb_017214_040 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_012305_140 Hb_012305_140 Hb_003992_180--Hb_012305_140 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060 Hb_005694_130 Hb_005694_130 Hb_003992_180--Hb_005694_130 Hb_000866_080 Hb_000866_080 Hb_003895_020--Hb_000866_080 Hb_004324_060 Hb_004324_060 Hb_003895_020--Hb_004324_060 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010 Hb_000110_350 Hb_000110_350 Hb_000179_190--Hb_000110_350 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_159295_010 Hb_159295_010 Hb_001911_010--Hb_159295_010 Hb_007031_040 Hb_007031_040 Hb_001911_010--Hb_007031_040 Hb_002248_120 Hb_002248_120 Hb_001911_010--Hb_002248_120 Hb_001911_010--Hb_001410_130 Hb_000421_110 Hb_000421_110 Hb_001911_010--Hb_000421_110 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_000941_080 Hb_000941_080 Hb_001410_130--Hb_000941_080 Hb_001009_090 Hb_001009_090 Hb_001410_130--Hb_001009_090 Hb_006054_030 Hb_006054_030 Hb_001410_130--Hb_006054_030 Hb_002119_090 Hb_002119_090 Hb_001410_130--Hb_002119_090 Hb_044653_020 Hb_044653_020 Hb_001410_130--Hb_044653_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.84361 3.5 2.27293 1.51862 1.18991 1.09602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.739482 0.552037 0.568064 0.81209 1.58328

CAGE analysis