Hb_006615_040

Information

Type -
Description -
Location Contig6615: 25500-26873
Sequence    

Annotation

kegg
ID rcu:RCOM_0009590
description monoxygenase, putative
nr
ID XP_002530077.1
description monoxygenase, putative [Ricinus communis]
swissprot
ID A6T923
description FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1
trembl
ID B9SVQ8
description Monoxygenase, putative OS=Ricinus communis GN=RCOM_0009590 PE=4 SV=1
Gene Ontology
ID GO:0009540
description zeaxanthin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_040 0.0 - - monoxygenase, putative [Ricinus communis]
2 Hb_004230_060 0.1929223016 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
3 Hb_004976_040 0.1931138339 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
4 Hb_005147_040 0.1939016292 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
5 Hb_001584_010 0.1944017501 - - kelch repeat protein, putative [Ricinus communis]
6 Hb_004466_070 0.1947185855 - - hypothetical protein RCOM_1447500 [Ricinus communis]
7 Hb_000107_440 0.2005637358 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
8 Hb_008246_090 0.2019276405 - - -
9 Hb_012018_010 0.2039495615 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
10 Hb_007253_040 0.2072407217 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
11 Hb_000421_020 0.2096643687 - - ascorbate peroxidase [Hevea brasiliensis]
12 Hb_003299_010 0.2099554554 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_003525_020 0.2116331814 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001248_110 0.2132231614 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_002272_140 0.2139170788 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
16 Hb_007773_030 0.2174186143 - - -
17 Hb_010080_020 0.2183679888 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
18 Hb_000270_850 0.2190430255 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000566_190 0.2215911673 - - unnamed protein product [Vitis vinifera]
20 Hb_005157_010 0.2242475287 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]

Gene co-expression network

sample Hb_006615_040 Hb_006615_040 Hb_004230_060 Hb_004230_060 Hb_006615_040--Hb_004230_060 Hb_004976_040 Hb_004976_040 Hb_006615_040--Hb_004976_040 Hb_005147_040 Hb_005147_040 Hb_006615_040--Hb_005147_040 Hb_001584_010 Hb_001584_010 Hb_006615_040--Hb_001584_010 Hb_004466_070 Hb_004466_070 Hb_006615_040--Hb_004466_070 Hb_000107_440 Hb_000107_440 Hb_006615_040--Hb_000107_440 Hb_001514_100 Hb_001514_100 Hb_004230_060--Hb_001514_100 Hb_002085_070 Hb_002085_070 Hb_004230_060--Hb_002085_070 Hb_000417_030 Hb_000417_030 Hb_004230_060--Hb_000417_030 Hb_008616_060 Hb_008616_060 Hb_004230_060--Hb_008616_060 Hb_000223_050 Hb_000223_050 Hb_004230_060--Hb_000223_050 Hb_010962_030 Hb_010962_030 Hb_004230_060--Hb_010962_030 Hb_000645_240 Hb_000645_240 Hb_004976_040--Hb_000645_240 Hb_008226_100 Hb_008226_100 Hb_004976_040--Hb_008226_100 Hb_000010_350 Hb_000010_350 Hb_004976_040--Hb_000010_350 Hb_000866_090 Hb_000866_090 Hb_004976_040--Hb_000866_090 Hb_004126_080 Hb_004126_080 Hb_004976_040--Hb_004126_080 Hb_089100_040 Hb_089100_040 Hb_004976_040--Hb_089100_040 Hb_020805_170 Hb_020805_170 Hb_005147_040--Hb_020805_170 Hb_005147_040--Hb_000010_350 Hb_000062_080 Hb_000062_080 Hb_005147_040--Hb_000062_080 Hb_001863_150 Hb_001863_150 Hb_005147_040--Hb_001863_150 Hb_005147_040--Hb_000107_440 Hb_005147_040--Hb_000645_240 Hb_000189_120 Hb_000189_120 Hb_001584_010--Hb_000189_120 Hb_008175_030 Hb_008175_030 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_000778_020 Hb_000778_020 Hb_001584_010--Hb_000778_020 Hb_000007_160 Hb_000007_160 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020 Hb_001863_450 Hb_001863_450 Hb_004466_070--Hb_001863_450 Hb_158696_010 Hb_158696_010 Hb_004466_070--Hb_158696_010 Hb_001248_110 Hb_001248_110 Hb_004466_070--Hb_001248_110 Hb_004166_010 Hb_004166_010 Hb_004466_070--Hb_004166_010 Hb_033642_070 Hb_033642_070 Hb_004466_070--Hb_033642_070 Hb_003371_140 Hb_003371_140 Hb_004466_070--Hb_003371_140 Hb_000038_040 Hb_000038_040 Hb_000107_440--Hb_000038_040 Hb_000803_060 Hb_000803_060 Hb_000107_440--Hb_000803_060 Hb_006846_020 Hb_006846_020 Hb_000107_440--Hb_006846_020 Hb_011716_050 Hb_011716_050 Hb_000107_440--Hb_011716_050 Hb_002477_120 Hb_002477_120 Hb_000107_440--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_000107_440--Hb_007007_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0893992 2.85392 0.56513 0.292043 0.0784402 0.371195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1364 0.0715241 0 1.0047 0.0735967

CAGE analysis