Hb_006615_050

Information

Type -
Description -
Location Contig6615: 28803-34166
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14770g
description POPTRDRAFT_822181; BSD domain-containing family protein
nr
ID XP_012080470.1
description PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11782 PE=4 SV=1
Gene Ontology
ID GO:0004252
description bsd domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53022: 28817-34125
cDNA
(Sanger)
(ID:Location)		 032_D16.ab1: 30333-34125 , 039_K02.ab1: 29470-34125 , 041_N02.ab1: 30331-34125

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_050 0.0 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
2 Hb_004807_020 0.0642492156 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
3 Hb_001077_070 0.0738378516 - - 60S ribosomal protein L9, putative [Ricinus communis]
4 Hb_004312_010 0.0740075146 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
5 Hb_171900_090 0.0769483842 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007007_040 0.0773612693 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
7 Hb_000789_320 0.0831293006 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
8 Hb_001025_090 0.0841531398 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
9 Hb_000144_070 0.0842074306 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001671_040 0.0865194416 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
11 Hb_001776_060 0.0869383495 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
12 Hb_000173_310 0.0884513615 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
13 Hb_002272_050 0.0884616982 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
14 Hb_002909_040 0.0900998793 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
15 Hb_004648_090 0.0912324298 - - peroxisomal biogenesis factor, putative [Ricinus communis]
16 Hb_000260_680 0.0936014158 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
17 Hb_000959_220 0.094101949 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000866_310 0.0954482762 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
19 Hb_000086_170 0.0957448747 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
20 Hb_003760_030 0.095802022 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]

Gene co-expression network

sample Hb_006615_050 Hb_006615_050 Hb_004807_020 Hb_004807_020 Hb_006615_050--Hb_004807_020 Hb_001077_070 Hb_001077_070 Hb_006615_050--Hb_001077_070 Hb_004312_010 Hb_004312_010 Hb_006615_050--Hb_004312_010 Hb_171900_090 Hb_171900_090 Hb_006615_050--Hb_171900_090 Hb_007007_040 Hb_007007_040 Hb_006615_050--Hb_007007_040 Hb_000789_320 Hb_000789_320 Hb_006615_050--Hb_000789_320 Hb_001025_090 Hb_001025_090 Hb_004807_020--Hb_001025_090 Hb_001025_120 Hb_001025_120 Hb_004807_020--Hb_001025_120 Hb_004807_020--Hb_171900_090 Hb_146255_020 Hb_146255_020 Hb_004807_020--Hb_146255_020 Hb_018790_020 Hb_018790_020 Hb_004807_020--Hb_018790_020 Hb_001077_070--Hb_004807_020 Hb_001950_070 Hb_001950_070 Hb_001077_070--Hb_001950_070 Hb_001077_070--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_001077_070--Hb_000866_310 Hb_002909_040 Hb_002909_040 Hb_001077_070--Hb_002909_040 Hb_006132_110 Hb_006132_110 Hb_004312_010--Hb_006132_110 Hb_000300_260 Hb_000300_260 Hb_004312_010--Hb_000300_260 Hb_000086_170 Hb_000086_170 Hb_004312_010--Hb_000086_170 Hb_000173_310 Hb_000173_310 Hb_004312_010--Hb_000173_310 Hb_003213_010 Hb_003213_010 Hb_004312_010--Hb_003213_010 Hb_171900_090--Hb_000789_320 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_171900_090--Hb_001025_090 Hb_003119_090 Hb_003119_090 Hb_007007_040--Hb_003119_090 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_000751_030 Hb_000751_030 Hb_007007_040--Hb_000751_030 Hb_023313_040 Hb_023313_040 Hb_007007_040--Hb_023313_040 Hb_003760_030 Hb_003760_030 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_000339_040 Hb_000339_040 Hb_000789_320--Hb_000339_040 Hb_001623_270 Hb_001623_270 Hb_000789_320--Hb_001623_270 Hb_000789_320--Hb_001025_090 Hb_000789_320--Hb_000866_310 Hb_001153_210 Hb_001153_210 Hb_000789_320--Hb_001153_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.126 19.6469 40.7167 20.5161 19.6014 14.8213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0843 26.8022 11.1984 14.141 14.4684

CAGE analysis