Hb_006615_060

Information

Type -
Description -
Location Contig6615: 44837-46105
Sequence    

Annotation

kegg
ID rcu:RCOM_1577260
description hypothetical protein
nr
ID XP_002513460.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RI91
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53023: 44920-45424 , PASA_asmbl_53024: 45996-46341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_164146_020 0.0886399005 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_001153_250 0.0998978427 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
4 Hb_005381_010 0.1080595685 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
5 Hb_074672_010 0.1088443846 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_077694_010 0.1091943847 - - uncharacterized protein LOC100305624 [Glycine max]
7 Hb_120011_010 0.112051089 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_001310_010 0.1151055824 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
9 Hb_008202_020 0.1227690601 - - receptor serine/threonine kinase, putative [Ricinus communis]
10 Hb_086614_010 0.1231480561 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
11 Hb_002311_160 0.1280267467 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
12 Hb_000959_240 0.1310272592 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_001660_080 0.1318832189 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
14 Hb_004612_020 0.1336960856 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
15 Hb_121540_010 0.1350048086 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
16 Hb_029664_010 0.1357212835 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000069_530 0.137307022 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
18 Hb_155896_010 0.1399725913 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
19 Hb_004899_010 0.1428912093 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
20 Hb_001619_140 0.1470808473 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006615_060 Hb_006615_060 Hb_164146_020 Hb_164146_020 Hb_006615_060--Hb_164146_020 Hb_001153_250 Hb_001153_250 Hb_006615_060--Hb_001153_250 Hb_005381_010 Hb_005381_010 Hb_006615_060--Hb_005381_010 Hb_074672_010 Hb_074672_010 Hb_006615_060--Hb_074672_010 Hb_077694_010 Hb_077694_010 Hb_006615_060--Hb_077694_010 Hb_120011_010 Hb_120011_010 Hb_006615_060--Hb_120011_010 Hb_001310_010 Hb_001310_010 Hb_164146_020--Hb_001310_010 Hb_008202_020 Hb_008202_020 Hb_164146_020--Hb_008202_020 Hb_164146_020--Hb_120011_010 Hb_086614_010 Hb_086614_010 Hb_164146_020--Hb_086614_010 Hb_002311_160 Hb_002311_160 Hb_164146_020--Hb_002311_160 Hb_029664_010 Hb_029664_010 Hb_001153_250--Hb_029664_010 Hb_000627_130 Hb_000627_130 Hb_001153_250--Hb_000627_130 Hb_000959_240 Hb_000959_240 Hb_001153_250--Hb_000959_240 Hb_007858_020 Hb_007858_020 Hb_001153_250--Hb_007858_020 Hb_003207_230 Hb_003207_230 Hb_001153_250--Hb_003207_230 Hb_000069_530 Hb_000069_530 Hb_005381_010--Hb_000069_530 Hb_121540_010 Hb_121540_010 Hb_005381_010--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_001660_080 Hb_001660_080 Hb_005381_010--Hb_001660_080 Hb_005381_010--Hb_077694_010 Hb_074672_010--Hb_120011_010 Hb_074672_010--Hb_077694_010 Hb_074672_010--Hb_000959_240 Hb_017693_040 Hb_017693_040 Hb_074672_010--Hb_017693_040 Hb_001619_140 Hb_001619_140 Hb_074672_010--Hb_001619_140 Hb_077694_010--Hb_121540_010 Hb_077694_010--Hb_017693_040 Hb_077694_010--Hb_000069_530 Hb_077694_010--Hb_001660_080 Hb_077694_010--Hb_120011_010 Hb_120011_010--Hb_001619_140 Hb_120011_010--Hb_001310_010 Hb_120011_010--Hb_008202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.41278 8.79503 1.37458 0.0155803 0.034442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.107548 1.05372

CAGE analysis