Hb_006615_080

Information

Type -
Description -
Location Contig6615: 51343-56179
Sequence    

Annotation

kegg
ID rcu:RCOM_1466920
description hypothetical protein
nr
ID XP_012080460.1
description PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53027: 51325-56576 , PASA_asmbl_53028: 51885-56576 , PASA_asmbl_53029: 54097-56576 , PASA_asmbl_53030: 56603-56984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_080 0.0 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
2 Hb_002231_030 0.1304893627 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
3 Hb_000210_010 0.1507589068 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
4 Hb_000649_130 0.1543280804 - - Polcalcin Jun o, putative [Ricinus communis]
5 Hb_011236_010 0.157428682 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
6 Hb_017987_050 0.1577546187 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
7 Hb_000342_060 0.1582267307 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
8 Hb_000699_090 0.1618033891 - - cyclophilin, putative [Ricinus communis]
9 Hb_000487_230 0.163539513 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
10 Hb_005162_060 0.1637331514 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
11 Hb_183612_060 0.1647696837 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
12 Hb_000424_200 0.1684821216 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
13 Hb_001648_030 0.1693129468 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
14 Hb_006256_030 0.1701158783 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
15 Hb_000099_070 0.1740386129 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
16 Hb_003929_150 0.1775932557 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
17 Hb_000891_030 0.1795259472 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
18 Hb_003038_190 0.180255136 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
19 Hb_002235_080 0.1814755967 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
20 Hb_000009_450 0.1820949855 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_006615_080 Hb_006615_080 Hb_002231_030 Hb_002231_030 Hb_006615_080--Hb_002231_030 Hb_000210_010 Hb_000210_010 Hb_006615_080--Hb_000210_010 Hb_000649_130 Hb_000649_130 Hb_006615_080--Hb_000649_130 Hb_011236_010 Hb_011236_010 Hb_006615_080--Hb_011236_010 Hb_017987_050 Hb_017987_050 Hb_006615_080--Hb_017987_050 Hb_000342_060 Hb_000342_060 Hb_006615_080--Hb_000342_060 Hb_007044_060 Hb_007044_060 Hb_002231_030--Hb_007044_060 Hb_003044_090 Hb_003044_090 Hb_002231_030--Hb_003044_090 Hb_000997_190 Hb_000997_190 Hb_002231_030--Hb_000997_190 Hb_000906_040 Hb_000906_040 Hb_002231_030--Hb_000906_040 Hb_000487_230 Hb_000487_230 Hb_002231_030--Hb_000487_230 Hb_000699_090 Hb_000699_090 Hb_002231_030--Hb_000699_090 Hb_007943_050 Hb_007943_050 Hb_000210_010--Hb_007943_050 Hb_000210_010--Hb_000649_130 Hb_006909_060 Hb_006909_060 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_005074_030 Hb_005074_030 Hb_000649_130--Hb_005074_030 Hb_000178_130 Hb_000178_130 Hb_000649_130--Hb_000178_130 Hb_000327_380 Hb_000327_380 Hb_000649_130--Hb_000327_380 Hb_116608_010 Hb_116608_010 Hb_000649_130--Hb_116608_010 Hb_000649_130--Hb_007943_050 Hb_004223_040 Hb_004223_040 Hb_011236_010--Hb_004223_040 Hb_003929_150 Hb_003929_150 Hb_011236_010--Hb_003929_150 Hb_011236_010--Hb_000699_090 Hb_006478_160 Hb_006478_160 Hb_011236_010--Hb_006478_160 Hb_001718_030 Hb_001718_030 Hb_011236_010--Hb_001718_030 Hb_000676_310 Hb_000676_310 Hb_011236_010--Hb_000676_310 Hb_000161_130 Hb_000161_130 Hb_017987_050--Hb_000161_130 Hb_000099_150 Hb_000099_150 Hb_017987_050--Hb_000099_150 Hb_000327_230 Hb_000327_230 Hb_017987_050--Hb_000327_230 Hb_139294_010 Hb_139294_010 Hb_017987_050--Hb_139294_010 Hb_004324_090 Hb_004324_090 Hb_017987_050--Hb_004324_090 Hb_000310_020 Hb_000310_020 Hb_017987_050--Hb_000310_020 Hb_000342_060--Hb_000164_020 Hb_001246_110 Hb_001246_110 Hb_000342_060--Hb_001246_110 Hb_000056_210 Hb_000056_210 Hb_000342_060--Hb_000056_210 Hb_095296_010 Hb_095296_010 Hb_000342_060--Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_000342_060--Hb_000868_110 Hb_000856_380 Hb_000856_380 Hb_000342_060--Hb_000856_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3634 28.2151 10.6796 15.3605 6.72341 5.02152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3832 58.1209 19.9058 5.90991 14.5658

CAGE analysis