Hb_006615_100

Information

Type -
Description -
Location Contig6615: 61884-63959
Sequence    

Annotation

kegg
ID rcu:RCOM_1466930
description hypothetical protein
nr
ID XP_012080455.1
description PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11778 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53031: 61862-63876 , PASA_asmbl_53032: 61920-63823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_100 0.0 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
2 Hb_007680_020 0.1103244313 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_010128_070 0.1174533354 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000281_010 0.1189616744 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
5 Hb_001195_150 0.1237219365 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
6 Hb_000997_410 0.1284999445 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
7 Hb_002804_050 0.1289883556 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
8 Hb_128376_010 0.1325484532 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_005122_060 0.1410284413 - - unnamed protein product [Vitis vinifera]
10 Hb_003106_150 0.1416150301 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
11 Hb_002783_050 0.1428184388 - - zinc finger protein, putative [Ricinus communis]
12 Hb_004017_040 0.152613846 - - kinetochore protein nuf2, putative [Ricinus communis]
13 Hb_002849_080 0.1529485718 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
14 Hb_000116_460 0.1538676859 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
15 Hb_009620_030 0.1601512864 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
16 Hb_000261_290 0.1611662631 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
17 Hb_006588_050 0.1642407485 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
18 Hb_010883_080 0.1651572118 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
19 Hb_000270_560 0.165510712 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
20 Hb_002928_160 0.1657809372 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]

Gene co-expression network

sample Hb_006615_100 Hb_006615_100 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_010128_070 Hb_010128_070 Hb_006615_100--Hb_010128_070 Hb_000281_010 Hb_000281_010 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_002804_050 Hb_002804_050 Hb_006615_100--Hb_002804_050 Hb_005122_060 Hb_005122_060 Hb_007680_020--Hb_005122_060 Hb_007680_020--Hb_001195_150 Hb_000307_250 Hb_000307_250 Hb_007680_020--Hb_000307_250 Hb_007257_050 Hb_007257_050 Hb_007680_020--Hb_007257_050 Hb_007680_020--Hb_000281_010 Hb_003106_150 Hb_003106_150 Hb_010128_070--Hb_003106_150 Hb_010128_070--Hb_000281_010 Hb_017075_030 Hb_017075_030 Hb_010128_070--Hb_017075_030 Hb_009620_030 Hb_009620_030 Hb_010128_070--Hb_009620_030 Hb_000116_460 Hb_000116_460 Hb_010128_070--Hb_000116_460 Hb_000281_010--Hb_000116_460 Hb_000685_080 Hb_000685_080 Hb_000281_010--Hb_000685_080 Hb_001946_240 Hb_001946_240 Hb_000281_010--Hb_001946_240 Hb_009646_050 Hb_009646_050 Hb_000281_010--Hb_009646_050 Hb_000281_010--Hb_003106_150 Hb_128376_010 Hb_128376_010 Hb_001195_150--Hb_128376_010 Hb_001195_150--Hb_000116_460 Hb_008246_030 Hb_008246_030 Hb_001195_150--Hb_008246_030 Hb_001195_150--Hb_000281_010 Hb_001731_020 Hb_001731_020 Hb_000997_410--Hb_001731_020 Hb_114984_010 Hb_114984_010 Hb_000997_410--Hb_114984_010 Hb_000261_290 Hb_000261_290 Hb_000997_410--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_000997_410--Hb_006588_050 Hb_000997_410--Hb_009620_030 Hb_001529_060 Hb_001529_060 Hb_002804_050--Hb_001529_060 Hb_002849_080 Hb_002849_080 Hb_002804_050--Hb_002849_080 Hb_002783_050 Hb_002783_050 Hb_002804_050--Hb_002783_050 Hb_002804_050--Hb_003106_150 Hb_002804_050--Hb_010128_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.1655 54.2379 18.0219 13.9024 45.2489 55.8564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99127 7.01908 12.0534 15.4426 4.58702

CAGE analysis