Hb_006615_120

Information

Type -
Description -
Location Contig6615: 67636-70802
Sequence    

Annotation

kegg
ID rcu:RCOM_1466950
description zinc finger protein, putative
nr
ID XP_012080454.1
description PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067KGK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11776 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53036: 67470-69284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_120 0.0 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
2 Hb_004129_070 0.0511945656 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
3 Hb_000162_280 0.0515305105 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
4 Hb_009112_010 0.0622073742 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
5 Hb_000174_060 0.0657119167 - - zinc finger family protein [Populus trichocarpa]
6 Hb_002276_240 0.0658659202 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
7 Hb_001033_050 0.0691938855 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
8 Hb_184798_080 0.0720114712 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
9 Hb_000070_080 0.0736805122 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
10 Hb_002615_090 0.0738297565 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_001767_140 0.0744063977 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
12 Hb_008103_060 0.0744740627 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
13 Hb_008253_030 0.0745362398 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
14 Hb_008253_020 0.0747909835 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
15 Hb_003640_040 0.0765143953 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
16 Hb_008112_030 0.0768115392 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009780_100 0.0769838547 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
18 Hb_140049_040 0.0780346815 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
19 Hb_002078_110 0.0784499611 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
20 Hb_001135_120 0.0786805809 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006615_120 Hb_006615_120 Hb_004129_070 Hb_004129_070 Hb_006615_120--Hb_004129_070 Hb_000162_280 Hb_000162_280 Hb_006615_120--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_006615_120--Hb_009112_010 Hb_000174_060 Hb_000174_060 Hb_006615_120--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_006615_120--Hb_002276_240 Hb_001033_050 Hb_001033_050 Hb_006615_120--Hb_001033_050 Hb_004129_070--Hb_000174_060 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_000162_280--Hb_009112_010 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_003633_070 Hb_003633_070 Hb_000162_280--Hb_003633_070 Hb_000116_060 Hb_000116_060 Hb_000162_280--Hb_000116_060 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090 Hb_009112_010--Hb_003633_070 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_000960_050 Hb_000960_050 Hb_009112_010--Hb_000960_050 Hb_008112_030 Hb_008112_030 Hb_009112_010--Hb_008112_030 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002267_140 Hb_002267_140 Hb_002276_240--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_002276_240--Hb_001147_110 Hb_002276_240--Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_002276_240--Hb_008253_030 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001033_050--Hb_001135_120 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3421 30.0557 19.1907 19.5835 23.6468 23.3175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59033 11.4249 15.1714 14.1572 11.2674

CAGE analysis