Hb_006615_180

Information

Type -
Description -
Location Contig6615: 107333-108737
Sequence    

Annotation

kegg
ID cic:CICLE_v10031546mg
description hypothetical protein
nr
ID KJB19457.1
description hypothetical protein B456_003G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2MM24
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G103400 PE=4 SV=1
Gene Ontology
ID GO:0035251
description udp-glycosyltransferase 89b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53038: 107634-108111 , PASA_asmbl_53039: 108199-108474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_180 0.0 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
2 Hb_003602_090 0.0575595307 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
3 Hb_000723_060 0.0652937069 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_000000_070 0.0759375036 - - allene oxide synthase [Hevea brasiliensis]
5 Hb_000101_140 0.0776462538 - - amino acid transporter, putative [Ricinus communis]
6 Hb_009510_050 0.0811795572 - - conserved hypothetical protein [Ricinus communis]
7 Hb_117127_010 0.0912567423 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
8 Hb_002239_030 0.0996738172 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
9 Hb_000656_370 0.1029747266 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_002529_080 0.1058774695 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
11 Hb_004122_020 0.107180034 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
12 Hb_060237_010 0.1073263734 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002410_010 0.10754335 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
14 Hb_000098_250 0.1082265733 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
15 Hb_082870_010 0.110012802 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_002968_010 0.1161035402 - - PREDICTED: pectinesterase [Jatropha curcas]
17 Hb_000137_030 0.1189383083 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
18 Hb_000338_030 0.1196438009 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
19 Hb_000521_210 0.1203455381 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_000976_340 0.1205584223 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006615_180 Hb_006615_180 Hb_003602_090 Hb_003602_090 Hb_006615_180--Hb_003602_090 Hb_000723_060 Hb_000723_060 Hb_006615_180--Hb_000723_060 Hb_000000_070 Hb_000000_070 Hb_006615_180--Hb_000000_070 Hb_000101_140 Hb_000101_140 Hb_006615_180--Hb_000101_140 Hb_009510_050 Hb_009510_050 Hb_006615_180--Hb_009510_050 Hb_117127_010 Hb_117127_010 Hb_006615_180--Hb_117127_010 Hb_003602_090--Hb_009510_050 Hb_003602_090--Hb_000723_060 Hb_082870_010 Hb_082870_010 Hb_003602_090--Hb_082870_010 Hb_003602_090--Hb_117127_010 Hb_019040_010 Hb_019040_010 Hb_003602_090--Hb_019040_010 Hb_000723_060--Hb_000101_140 Hb_002239_030 Hb_002239_030 Hb_000723_060--Hb_002239_030 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000656_370 Hb_000656_370 Hb_000723_060--Hb_000656_370 Hb_002529_080 Hb_002529_080 Hb_000000_070--Hb_002529_080 Hb_001568_120 Hb_001568_120 Hb_000000_070--Hb_001568_120 Hb_000000_070--Hb_117127_010 Hb_008667_030 Hb_008667_030 Hb_000000_070--Hb_008667_030 Hb_004122_020 Hb_004122_020 Hb_000000_070--Hb_004122_020 Hb_000101_140--Hb_000656_370 Hb_000101_140--Hb_002239_030 Hb_002968_010 Hb_002968_010 Hb_000101_140--Hb_002968_010 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210 Hb_009510_050--Hb_082870_010 Hb_009510_050--Hb_117127_010 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020 Hb_000098_250 Hb_000098_250 Hb_117127_010--Hb_000098_250 Hb_117127_010--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_117127_010--Hb_002410_010 Hb_117127_010--Hb_002529_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0780643 13.1414 2.55022 5.86346 0.0734206 0.0779879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.36301 1.22933

CAGE analysis