Hb_006616_050

Information

Type -
Description -
Location Contig6616: 80523-84441
Sequence    

Annotation

kegg
ID rcu:RCOM_1096970
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.10.2)
nr
ID XP_012091449.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
swissprot
ID O64781
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 OS=Arabidopsis thaliana GN=At1g61390 PE=2 SV=1
trembl
ID A0A067JDL7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21324 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006616_050 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
2 Hb_064855_010 0.0837249685 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000796_100 0.0882985795 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_000844_020 0.0905675883 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
5 Hb_001271_040 0.0906581242 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
6 Hb_066262_020 0.0925525297 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
7 Hb_006452_140 0.0996458213 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
8 Hb_002067_110 0.1061270502 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
9 Hb_001104_260 0.108413838 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
10 Hb_001403_100 0.1084321023 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
11 Hb_005204_030 0.1084868942 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
12 Hb_008078_040 0.1087891985 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
13 Hb_000756_040 0.108922107 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_004829_050 0.1090385383 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
15 Hb_011639_130 0.1092049256 - - mads box protein, putative [Ricinus communis]
16 Hb_000764_060 0.1094176972 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
17 Hb_007676_070 0.1096320345 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
18 Hb_068447_010 0.1102567918 - - protein with unknown function [Ricinus communis]
19 Hb_083270_010 0.1127414909 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
20 Hb_011924_010 0.1132849966 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]

Gene co-expression network

sample Hb_006616_050 Hb_006616_050 Hb_064855_010 Hb_064855_010 Hb_006616_050--Hb_064855_010 Hb_000796_100 Hb_000796_100 Hb_006616_050--Hb_000796_100 Hb_000844_020 Hb_000844_020 Hb_006616_050--Hb_000844_020 Hb_001271_040 Hb_001271_040 Hb_006616_050--Hb_001271_040 Hb_066262_020 Hb_066262_020 Hb_006616_050--Hb_066262_020 Hb_006452_140 Hb_006452_140 Hb_006616_050--Hb_006452_140 Hb_064855_010--Hb_000844_020 Hb_064855_010--Hb_066262_020 Hb_064855_010--Hb_000796_100 Hb_064855_010--Hb_001271_040 Hb_023827_010 Hb_023827_010 Hb_064855_010--Hb_023827_010 Hb_001403_100 Hb_001403_100 Hb_064855_010--Hb_001403_100 Hb_000796_100--Hb_000844_020 Hb_000796_100--Hb_006452_140 Hb_011924_030 Hb_011924_030 Hb_000796_100--Hb_011924_030 Hb_000796_100--Hb_023827_010 Hb_002067_110 Hb_002067_110 Hb_000844_020--Hb_002067_110 Hb_000844_020--Hb_001271_040 Hb_000844_020--Hb_066262_020 Hb_101778_020 Hb_101778_020 Hb_000844_020--Hb_101778_020 Hb_001271_040--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_001271_040--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_068447_010 Hb_068447_010 Hb_001271_040--Hb_068447_010 Hb_066262_020--Hb_002067_110 Hb_066262_020--Hb_001271_040 Hb_066262_020--Hb_068447_010 Hb_006124_040 Hb_006124_040 Hb_006452_140--Hb_006124_040 Hb_002648_020 Hb_002648_020 Hb_006452_140--Hb_002648_020 Hb_006452_140--Hb_001271_040 Hb_006452_140--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_006452_140--Hb_001104_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0556647 4.17894 0.0158272 0.0303606 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0124978 0 0.619946 0

CAGE analysis