Hb_006616_070

Information

Type -
Description -
Location Contig6616: 117920-128714
Sequence    

Annotation

kegg
ID bvg:104894399
description uncharacterized LOC104894399
nr
ID XP_010678922.1
description PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
swissprot
ID O93209
description Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1
trembl
ID A0A0D3A328
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006616_070 0.0 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
2 Hb_006827_010 0.0402673537 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
3 Hb_000138_180 0.0629122398 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
4 Hb_001267_020 0.0745308914 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_000450_110 0.1177125243 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_001300_090 0.1457946087 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
7 Hb_000247_060 0.1561639122 transcription factor TF Family: bHLH PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
8 Hb_147604_010 0.1566124329 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_000311_130 0.1580270003 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
10 Hb_010623_010 0.1581862806 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
11 Hb_000710_100 0.1582559805 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
12 Hb_002260_210 0.1601517317 - - unnamed protein product [Vitis vinifera]
13 Hb_002474_020 0.1601527481 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
14 Hb_000108_030 0.1601563815 - - -
15 Hb_152483_010 0.1613198168 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
16 Hb_041711_040 0.1616000376 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_039164_010 0.1616632452 - - -
18 Hb_000629_090 0.161731329 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
19 Hb_000710_110 0.161784741 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
20 Hb_004683_030 0.1620892078 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]

Gene co-expression network

sample Hb_006616_070 Hb_006616_070 Hb_006827_010 Hb_006827_010 Hb_006616_070--Hb_006827_010 Hb_000138_180 Hb_000138_180 Hb_006616_070--Hb_000138_180 Hb_001267_020 Hb_001267_020 Hb_006616_070--Hb_001267_020 Hb_000450_110 Hb_000450_110 Hb_006616_070--Hb_000450_110 Hb_001300_090 Hb_001300_090 Hb_006616_070--Hb_001300_090 Hb_000247_060 Hb_000247_060 Hb_006616_070--Hb_000247_060 Hb_006827_010--Hb_000138_180 Hb_006827_010--Hb_001267_020 Hb_006827_010--Hb_001300_090 Hb_004643_020 Hb_004643_020 Hb_006827_010--Hb_004643_020 Hb_002990_020 Hb_002990_020 Hb_006827_010--Hb_002990_020 Hb_000138_180--Hb_001267_020 Hb_002474_020 Hb_002474_020 Hb_000138_180--Hb_002474_020 Hb_000138_180--Hb_000450_110 Hb_000138_180--Hb_004643_020 Hb_001267_020--Hb_002474_020 Hb_001267_020--Hb_000450_110 Hb_001267_020--Hb_000247_060 Hb_000450_110--Hb_000247_060 Hb_000450_110--Hb_002474_020 Hb_009004_020 Hb_009004_020 Hb_000450_110--Hb_009004_020 Hb_002395_040 Hb_002395_040 Hb_000450_110--Hb_002395_040 Hb_000208_220 Hb_000208_220 Hb_001300_090--Hb_000208_220 Hb_000672_130 Hb_000672_130 Hb_001300_090--Hb_000672_130 Hb_001300_090--Hb_004643_020 Hb_003796_010 Hb_003796_010 Hb_001300_090--Hb_003796_010 Hb_029510_060 Hb_029510_060 Hb_001300_090--Hb_029510_060 Hb_000247_060--Hb_009004_020 Hb_000758_060 Hb_000758_060 Hb_000247_060--Hb_000758_060 Hb_000247_060--Hb_002474_020 Hb_003882_030 Hb_003882_030 Hb_000247_060--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_000247_060--Hb_002874_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00556301 0 0.0022933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0389393

CAGE analysis