Hb_006617_030

Information

Type -
Description -
Location Contig6617: 14562-19125
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q5DTZ0
description Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006617_030 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_010023_020 0.0001357954 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002020_030 0.0010525958 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_030085_050 0.0020421285 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
5 Hb_000266_070 0.0023630006 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
6 Hb_159777_010 0.0036357004 - - JHL22C18.10 [Jatropha curcas]
7 Hb_073373_010 0.0050561404 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
8 Hb_041626_010 0.005632391 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_000206_260 0.0084471544 - - cysteine protease, putative [Ricinus communis]
10 Hb_104984_010 0.0093357057 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_048482_010 0.0140376732 - - -
12 Hb_031104_010 0.016585265 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_000283_160 0.0197889761 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
14 Hb_006221_020 0.0210153602 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
15 Hb_072825_010 0.0232517892 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
16 Hb_000710_110 0.0265358092 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
17 Hb_065059_010 0.0300519841 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
18 Hb_000118_050 0.0303098038 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_008269_020 0.0303772457 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_084299_010 0.0309710403 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_006617_030 Hb_006617_030 Hb_010023_020 Hb_010023_020 Hb_006617_030--Hb_010023_020 Hb_002020_030 Hb_002020_030 Hb_006617_030--Hb_002020_030 Hb_030085_050 Hb_030085_050 Hb_006617_030--Hb_030085_050 Hb_000266_070 Hb_000266_070 Hb_006617_030--Hb_000266_070 Hb_159777_010 Hb_159777_010 Hb_006617_030--Hb_159777_010 Hb_073373_010 Hb_073373_010 Hb_006617_030--Hb_073373_010 Hb_010023_020--Hb_002020_030 Hb_010023_020--Hb_030085_050 Hb_010023_020--Hb_000266_070 Hb_010023_020--Hb_159777_010 Hb_010023_020--Hb_073373_010 Hb_002020_030--Hb_030085_050 Hb_002020_030--Hb_000266_070 Hb_002020_030--Hb_159777_010 Hb_002020_030--Hb_073373_010 Hb_030085_050--Hb_000266_070 Hb_030085_050--Hb_159777_010 Hb_030085_050--Hb_073373_010 Hb_000266_070--Hb_159777_010 Hb_000266_070--Hb_073373_010 Hb_159777_010--Hb_073373_010 Hb_041626_010 Hb_041626_010 Hb_159777_010--Hb_041626_010 Hb_073373_010--Hb_041626_010 Hb_000206_260 Hb_000206_260 Hb_073373_010--Hb_000206_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00409014 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0189984

CAGE analysis