Hb_006618_020

Information

Type -
Description -
Location Contig6618: 13127-16683
Sequence    

Annotation

kegg
ID rcu:RCOM_1679670
description Vacuolar-processing enzyme precursor (EC:3.4.22.34)
nr
ID XP_002509577.1
description Vacuolar-processing enzyme precursor [Ricinus communis]
swissprot
ID P49042
description Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1
trembl
ID B9RBP3
description Vacuolar-processing enzyme OS=Ricinus communis GN=RCOM_1679670 PE=4 SV=1
Gene Ontology
ID GO:0005773
description vacuolar-processing enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53054: 12958-16731 , PASA_asmbl_53055: 13790-14496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_020 0.0 - - Vacuolar-processing enzyme precursor [Ricinus communis]
2 Hb_004605_020 0.1188956967 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
3 Hb_033312_090 0.1236476481 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
4 Hb_061908_020 0.1260294471 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_000522_130 0.1282633207 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
6 Hb_002006_060 0.138858581 - - PREDICTED: oleosin 1-like [Jatropha curcas]
7 Hb_000369_070 0.1428078752 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_005271_180 0.1465254536 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
9 Hb_000808_160 0.146615663 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
10 Hb_172676_010 0.1470206408 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
11 Hb_004166_010 0.1474490871 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
12 Hb_001951_230 0.1487877655 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
13 Hb_002739_070 0.1495932654 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
14 Hb_006052_060 0.1515329024 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_002375_080 0.1521412475 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004907_070 0.1523484684 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
17 Hb_027402_100 0.1524214974 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
18 Hb_062229_010 0.155044626 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_001619_160 0.1557357111 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
20 Hb_002571_010 0.1577880971 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_006618_020 Hb_006618_020 Hb_004605_020 Hb_004605_020 Hb_006618_020--Hb_004605_020 Hb_033312_090 Hb_033312_090 Hb_006618_020--Hb_033312_090 Hb_061908_020 Hb_061908_020 Hb_006618_020--Hb_061908_020 Hb_000522_130 Hb_000522_130 Hb_006618_020--Hb_000522_130 Hb_002006_060 Hb_002006_060 Hb_006618_020--Hb_002006_060 Hb_000369_070 Hb_000369_070 Hb_006618_020--Hb_000369_070 Hb_004605_020--Hb_061908_020 Hb_027337_030 Hb_027337_030 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010 Hb_033312_090--Hb_000522_130 Hb_015882_020 Hb_015882_020 Hb_033312_090--Hb_015882_020 Hb_005569_030 Hb_005569_030 Hb_033312_090--Hb_005569_030 Hb_000705_130 Hb_000705_130 Hb_033312_090--Hb_000705_130 Hb_001538_050 Hb_001538_050 Hb_033312_090--Hb_001538_050 Hb_008040_060 Hb_008040_060 Hb_033312_090--Hb_008040_060 Hb_061908_020--Hb_062229_010 Hb_001391_100 Hb_001391_100 Hb_061908_020--Hb_001391_100 Hb_172676_010 Hb_172676_010 Hb_061908_020--Hb_172676_010 Hb_061908_020--Hb_027337_030 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_000522_130--Hb_001538_050 Hb_003914_050 Hb_003914_050 Hb_000522_130--Hb_003914_050 Hb_000522_130--Hb_008040_060 Hb_000522_130--Hb_000705_130 Hb_006717_010 Hb_006717_010 Hb_002006_060--Hb_006717_010 Hb_001948_090 Hb_001948_090 Hb_002006_060--Hb_001948_090 Hb_005155_010 Hb_005155_010 Hb_002006_060--Hb_005155_010 Hb_002006_060--Hb_061908_020 Hb_002006_060--Hb_172676_010 Hb_005539_100 Hb_005539_100 Hb_000369_070--Hb_005539_100 Hb_000369_070--Hb_000522_130 Hb_000369_070--Hb_001538_050 Hb_006483_090 Hb_006483_090 Hb_000369_070--Hb_006483_090 Hb_000369_070--Hb_004605_020 Hb_023386_050 Hb_023386_050 Hb_000369_070--Hb_023386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.629167 9.65813 2.81224 3.64866 0.178521 0.213137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.263279 0.09206 0.0433318 2.06544 4.87422

CAGE analysis