Hb_006618_070

Information

Type -
Description -
Location Contig6618: 61389-64294
Sequence    

Annotation

kegg
ID rcu:RCOM_1679860
description hypothetical protein
nr
ID XP_012087120.1
description PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K043
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20771 PE=4 SV=1
Gene Ontology
ID GO:0009570
description adenosine trna methylthiotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53059: 61410-64250 , PASA_asmbl_53060: 61421-64250 , PASA_asmbl_53061: 61410-64250 , PASA_asmbl_53062: 61421-64250
cDNA
(Sanger)
(ID:Location)		 019_O07.ab1: 62706-64248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_070 0.0 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
2 Hb_002498_170 0.1178062458 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
3 Hb_000140_440 0.1195552539 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
4 Hb_002249_040 0.1201392414 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
5 Hb_000211_040 0.1236911744 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
6 Hb_001959_240 0.1239605735 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_006555_040 0.124732424 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
8 Hb_000181_060 0.1271900925 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
9 Hb_000694_030 0.1277103949 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
10 Hb_000300_710 0.1296040882 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
11 Hb_030131_020 0.1324402049 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
12 Hb_000749_200 0.1327006435 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
13 Hb_007263_010 0.1337106181 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_001301_330 0.1344075736 - - OTU-like cysteine protease family protein [Populus trichocarpa]
15 Hb_006252_030 0.1353469509 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
16 Hb_004994_080 0.1370952454 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_006846_160 0.1395875857 - - electron transporter, putative [Ricinus communis]
18 Hb_153553_040 0.1405636443 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
19 Hb_001930_030 0.1409739362 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
20 Hb_000424_070 0.141502395 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006618_070 Hb_006618_070 Hb_002498_170 Hb_002498_170 Hb_006618_070--Hb_002498_170 Hb_000140_440 Hb_000140_440 Hb_006618_070--Hb_000140_440 Hb_002249_040 Hb_002249_040 Hb_006618_070--Hb_002249_040 Hb_000211_040 Hb_000211_040 Hb_006618_070--Hb_000211_040 Hb_001959_240 Hb_001959_240 Hb_006618_070--Hb_001959_240 Hb_006555_040 Hb_006555_040 Hb_006618_070--Hb_006555_040 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_006846_160 Hb_006846_160 Hb_002498_170--Hb_006846_160 Hb_006252_030 Hb_006252_030 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_000322_040 Hb_000322_040 Hb_002498_170--Hb_000322_040 Hb_000140_440--Hb_006555_040 Hb_004994_080 Hb_004994_080 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_008725_140 Hb_008725_140 Hb_002249_040--Hb_008725_140 Hb_001624_040 Hb_001624_040 Hb_002249_040--Hb_001624_040 Hb_004116_160 Hb_004116_160 Hb_002249_040--Hb_004116_160 Hb_002301_210 Hb_002301_210 Hb_002249_040--Hb_002301_210 Hb_000749_200 Hb_000749_200 Hb_002249_040--Hb_000749_200 Hb_015292_040 Hb_015292_040 Hb_000211_040--Hb_015292_040 Hb_000211_040--Hb_006555_040 Hb_000123_140 Hb_000123_140 Hb_000211_040--Hb_000123_140 Hb_000211_040--Hb_000140_440 Hb_000211_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_000211_040--Hb_007263_010 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_006911_070 Hb_006911_070 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_001959_240--Hb_002498_170 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_006555_040--Hb_004994_080 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.007 10.6371 69.7453 13.3986 15.1681 14.5074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.57808 7.06334 2.11274 5.43426 34.3903

CAGE analysis