Hb_006618_100

Information

Type transcription factor
Description TF Family: MYB
Location Contig6618: 89695-92195
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07830g
description hypothetical protein
nr
ID BAR45577.1
description MYB transcriptional factor [Populus tremula x Populus tremuloides]
swissprot
ID Q50EX6
description Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1
trembl
ID A0A067JNY9
description MYB family protein OS=Jatropha curcas GN=JCGZ_20768 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein odorant1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_100 0.0 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
2 Hb_010217_020 0.0599712843 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
3 Hb_145975_010 0.0685252276 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000349_280 0.0745228585 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004757_010 0.0808872249 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
6 Hb_004158_040 0.0818233308 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
7 Hb_001579_160 0.0839223058 - - PREDICTED: kininogen-1-like [Jatropha curcas]
8 Hb_001541_170 0.0851324684 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
9 Hb_011344_050 0.0874283826 - - PREDICTED: 21 kDa protein [Jatropha curcas]
10 Hb_001454_350 0.0935177972 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
11 Hb_005736_110 0.0972186427 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
12 Hb_027411_030 0.1007697695 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_000422_060 0.1024082115 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
14 Hb_005588_050 0.1029162798 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007441_100 0.1035916002 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
16 Hb_012217_010 0.1044415705 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
17 Hb_000098_230 0.1075160335 - - Potassium channel AKT2/3, putative [Ricinus communis]
18 Hb_002835_120 0.1110067201 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
19 Hb_001343_060 0.114513181 - - Cytochrome P450 [Theobroma cacao]
20 Hb_000991_060 0.1161720978 - - PREDICTED: thaumatin-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_006618_100 Hb_006618_100 Hb_010217_020 Hb_010217_020 Hb_006618_100--Hb_010217_020 Hb_145975_010 Hb_145975_010 Hb_006618_100--Hb_145975_010 Hb_000349_280 Hb_000349_280 Hb_006618_100--Hb_000349_280 Hb_004757_010 Hb_004757_010 Hb_006618_100--Hb_004757_010 Hb_004158_040 Hb_004158_040 Hb_006618_100--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_006618_100--Hb_001579_160 Hb_000953_110 Hb_000953_110 Hb_010217_020--Hb_000953_110 Hb_010217_020--Hb_004158_040 Hb_001454_350 Hb_001454_350 Hb_010217_020--Hb_001454_350 Hb_010217_020--Hb_000349_280 Hb_007545_220 Hb_007545_220 Hb_010217_020--Hb_007545_220 Hb_145975_010--Hb_004757_010 Hb_001343_060 Hb_001343_060 Hb_145975_010--Hb_001343_060 Hb_027411_030 Hb_027411_030 Hb_145975_010--Hb_027411_030 Hb_001141_430 Hb_001141_430 Hb_145975_010--Hb_001141_430 Hb_001269_430 Hb_001269_430 Hb_145975_010--Hb_001269_430 Hb_000422_060 Hb_000422_060 Hb_000349_280--Hb_000422_060 Hb_012217_010 Hb_012217_010 Hb_000349_280--Hb_012217_010 Hb_032260_040 Hb_032260_040 Hb_000349_280--Hb_032260_040 Hb_007441_100 Hb_007441_100 Hb_000349_280--Hb_007441_100 Hb_159791_010 Hb_159791_010 Hb_004757_010--Hb_159791_010 Hb_004757_010--Hb_001343_060 Hb_004757_010--Hb_001141_430 Hb_011344_050 Hb_011344_050 Hb_004757_010--Hb_011344_050 Hb_004757_010--Hb_027411_030 Hb_001712_010 Hb_001712_010 Hb_004757_010--Hb_001712_010 Hb_004158_040--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_004158_040--Hb_001722_110 Hb_005588_050 Hb_005588_050 Hb_004158_040--Hb_005588_050 Hb_004158_040--Hb_001454_350 Hb_009421_060 Hb_009421_060 Hb_001579_160--Hb_009421_060 Hb_001541_170 Hb_001541_170 Hb_001579_160--Hb_001541_170 Hb_001579_160--Hb_001454_350 Hb_001579_160--Hb_001722_110 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0329588 7.44727 1.76575 47.8062 0.0926253 0.136271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.53891 7.31089

CAGE analysis