Hb_006620_020

Information

Type -
Description -
Location Contig6620: 15053-16039
Sequence    

Annotation

kegg
ID rcu:RCOM_1032830
description hypothetical protein
nr
ID XP_012078156.1
description PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12035 PE=4 SV=1
Gene Ontology
ID GO:0008270
description forkhead box protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53073: 11235-16422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006620_020 0.0 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
2 Hb_000853_230 0.0348017506 - - syntaxin, putative [Ricinus communis]
3 Hb_000879_200 0.0499105802 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
4 Hb_004055_150 0.0544298205 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001926_030 0.0575398309 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
6 Hb_054865_100 0.0579995082 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
7 Hb_000174_110 0.0581131722 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
8 Hb_002686_250 0.06011851 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
9 Hb_033720_010 0.0611032141 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
10 Hb_006960_050 0.0617772492 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
11 Hb_009646_030 0.0632905615 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007317_110 0.0635622772 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
13 Hb_131646_010 0.0639042935 - - protein arginine n-methyltransferase, putative [Ricinus communis]
14 Hb_002175_030 0.0649246383 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
15 Hb_000794_050 0.0660279387 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
16 Hb_001369_180 0.0664647588 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
17 Hb_000538_100 0.0669199937 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000390_180 0.0670747731 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
19 Hb_002078_020 0.0678571941 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
20 Hb_000230_560 0.0682510881 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]

Gene co-expression network

sample Hb_006620_020 Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_000853_230--Hb_004055_150 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_000853_230--Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_001926_030--Hb_002686_250 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_054865_100--Hb_005276_210 Hb_000327_120 Hb_000327_120 Hb_054865_100--Hb_000327_120 Hb_054865_100--Hb_000174_110 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_002175_030 Hb_002175_030 Hb_000174_110--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_000174_110--Hb_001486_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4613 16.913 20.5157 16.0556 34.9111 29.4963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2009 22.1196 17.6572 17.8452 13.6619

CAGE analysis