Hb_006620_030

Information

Type -
Description -
Location Contig6620: 21240-26075
Sequence    

Annotation

kegg
ID rcu:RCOM_1032820
description nitrate reductase, putative (EC:1.7.1.1)
nr
ID XP_002513830.1
description nitrate reductase, putative [Ricinus communis]
swissprot
ID P36859
description Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1
trembl
ID B9RJB1
description Nitrate reductase OS=Ricinus communis GN=RCOM_1032820 PE=3 SV=1
Gene Ontology
ID GO:0009703
description nitrate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53074: 21240-26198 , PASA_asmbl_53075: 23720-26187 , PASA_asmbl_53076: 23545-23646
cDNA
(Sanger)
(ID:Location)		 012_O11.ab1: 25488-26187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006620_030 0.0 - - nitrate reductase, putative [Ricinus communis]
2 Hb_006501_080 0.0618777062 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
3 Hb_105148_020 0.0626749189 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
4 Hb_001369_590 0.0768717709 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
5 Hb_004308_030 0.078386858 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_002499_050 0.0806618975 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_129956_010 0.0811889108 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
8 Hb_023582_010 0.0864108774 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001680_020 0.0880743924 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
10 Hb_016297_010 0.0905082044 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
11 Hb_019053_040 0.0906020356 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001258_130 0.0947930249 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
13 Hb_000282_020 0.0963624668 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
14 Hb_023827_030 0.096421236 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
15 Hb_007007_100 0.1000667998 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
16 Hb_002121_030 0.101742093 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
17 Hb_000809_220 0.1023383207 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
18 Hb_049846_010 0.1027436905 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
19 Hb_001519_090 0.1045808975 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
20 Hb_000139_040 0.1058563572 - - spermine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006620_030 Hb_006620_030 Hb_006501_080 Hb_006501_080 Hb_006620_030--Hb_006501_080 Hb_105148_020 Hb_105148_020 Hb_006620_030--Hb_105148_020 Hb_001369_590 Hb_001369_590 Hb_006620_030--Hb_001369_590 Hb_004308_030 Hb_004308_030 Hb_006620_030--Hb_004308_030 Hb_002499_050 Hb_002499_050 Hb_006620_030--Hb_002499_050 Hb_129956_010 Hb_129956_010 Hb_006620_030--Hb_129956_010 Hb_006501_080--Hb_004308_030 Hb_001680_020 Hb_001680_020 Hb_006501_080--Hb_001680_020 Hb_004202_030 Hb_004202_030 Hb_006501_080--Hb_004202_030 Hb_029262_010 Hb_029262_010 Hb_006501_080--Hb_029262_010 Hb_003207_120 Hb_003207_120 Hb_006501_080--Hb_003207_120 Hb_019053_040 Hb_019053_040 Hb_105148_020--Hb_019053_040 Hb_001166_010 Hb_001166_010 Hb_105148_020--Hb_001166_010 Hb_023582_010 Hb_023582_010 Hb_105148_020--Hb_023582_010 Hb_001258_130 Hb_001258_130 Hb_105148_020--Hb_001258_130 Hb_023827_030 Hb_023827_030 Hb_105148_020--Hb_023827_030 Hb_005365_040 Hb_005365_040 Hb_001369_590--Hb_005365_040 Hb_002121_030 Hb_002121_030 Hb_001369_590--Hb_002121_030 Hb_001369_590--Hb_002499_050 Hb_000152_650 Hb_000152_650 Hb_001369_590--Hb_000152_650 Hb_000084_210 Hb_000084_210 Hb_001369_590--Hb_000084_210 Hb_004308_030--Hb_029262_010 Hb_000809_220 Hb_000809_220 Hb_004308_030--Hb_000809_220 Hb_049846_010 Hb_049846_010 Hb_004308_030--Hb_049846_010 Hb_004308_030--Hb_004202_030 Hb_002499_050--Hb_000084_210 Hb_000282_020 Hb_000282_020 Hb_002499_050--Hb_000282_020 Hb_002499_050--Hb_005365_040 Hb_048141_050 Hb_048141_050 Hb_002499_050--Hb_048141_050 Hb_129956_010--Hb_023827_030 Hb_129956_010--Hb_105148_020 Hb_129956_010--Hb_049846_010 Hb_000139_040 Hb_000139_040 Hb_129956_010--Hb_000139_040 Hb_000312_100 Hb_000312_100 Hb_129956_010--Hb_000312_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00778662 12.4842 155.505 50.8717 0.0184899 0.022653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0285444 0.0224624 0 1.50106 54.4588

CAGE analysis