Hb_006620_070

Information

Type -
Description -
Location Contig6620: 54356-55543
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08900g
description POPTRDRAFT_830202; hypothetical protein
nr
ID ADR30788.1
description chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
swissprot
ID P42732
description 30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1
trembl
ID I1SN85
description Chloroplast 30S ribosomal protein S13 OS=Hevea brasiliensis GN=cRPS13 PE=2 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53079: 54233-55663
cDNA
(Sanger)
(ID:Location)		 001_C01.ab1: 54282-55656 , 019_M03.ab1: 54311-55630 , 021_I09.ab1: 54233-55660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006620_070 0.0 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
2 Hb_004459_060 0.0555763405 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
3 Hb_001405_090 0.0870044491 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
4 Hb_007694_060 0.0979449137 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
5 Hb_000005_130 0.0985297573 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
6 Hb_002411_100 0.1039158969 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
7 Hb_000442_070 0.1048778517 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
8 Hb_011114_020 0.1061720611 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
9 Hb_012545_040 0.1116311018 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_006829_080 0.1180112952 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
11 Hb_002150_130 0.1209431124 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
12 Hb_003948_020 0.1227286419 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
13 Hb_003549_140 0.125039405 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_000042_290 0.1252493458 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
15 Hb_023732_050 0.1260668 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_005563_040 0.1292317791 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
17 Hb_002232_380 0.1295952282 - - malate dehydrogenase, putative [Ricinus communis]
18 Hb_005488_160 0.1307538618 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_000146_030 0.1307753553 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
20 Hb_000206_170 0.1310260441 - - hypothetical protein JCGZ_25514 [Jatropha curcas]

Gene co-expression network

sample Hb_006620_070 Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_006620_070--Hb_004459_060 Hb_001405_090 Hb_001405_090 Hb_006620_070--Hb_001405_090 Hb_007694_060 Hb_007694_060 Hb_006620_070--Hb_007694_060 Hb_000005_130 Hb_000005_130 Hb_006620_070--Hb_000005_130 Hb_002411_100 Hb_002411_100 Hb_006620_070--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_006620_070--Hb_000442_070 Hb_004459_060--Hb_007694_060 Hb_000146_030 Hb_000146_030 Hb_004459_060--Hb_000146_030 Hb_004459_060--Hb_002411_100 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_004459_060--Hb_000005_130 Hb_001405_090--Hb_004459_060 Hb_001405_090--Hb_000442_070 Hb_001405_090--Hb_007694_060 Hb_011114_020 Hb_011114_020 Hb_001405_090--Hb_011114_020 Hb_000206_170 Hb_000206_170 Hb_001405_090--Hb_000206_170 Hb_007694_060--Hb_000005_130 Hb_005488_160 Hb_005488_160 Hb_007694_060--Hb_005488_160 Hb_023732_050 Hb_023732_050 Hb_007694_060--Hb_023732_050 Hb_006829_080 Hb_006829_080 Hb_000005_130--Hb_006829_080 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_000802_050 Hb_000802_050 Hb_000005_130--Hb_000802_050 Hb_001959_060 Hb_001959_060 Hb_000005_130--Hb_001959_060 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_010557_010 Hb_010557_010 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000442_070--Hb_010557_010 Hb_000442_070--Hb_005563_040 Hb_000442_070--Hb_011114_020 Hb_000442_070--Hb_002411_100 Hb_000442_070--Hb_003948_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.38609 4.21372 117.861 42.2425 6.40697 12.0534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6941 30.8592 9.69929 7.13297 143.017

CAGE analysis