Hb_006623_020

Information

Type -
Description -
Location Contig6623: 21421-26254
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14690g
description POPTRDRAFT_250331; hypothetical protein
nr
ID XP_012078784.1
description PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
swissprot
ID Q8GWL2
description Protein LURP-one-related 7 OS=Arabidopsis thaliana GN=At2g30270 PE=2 SV=1
trembl
ID A0A067LEY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53081: 21399-26100
cDNA
(Sanger)
(ID:Location)		 014_D17.ab1: 21399-26029 , 016_D01.ab1: 21399-26073 , 028_N05.ab1: 21399-26100 , 050_M06.ab1: 21399-26009

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006623_020 0.0 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
2 Hb_000808_250 0.0443746271 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
3 Hb_021422_010 0.0581806789 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
4 Hb_000617_220 0.0722149019 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_003018_060 0.0737457329 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
6 Hb_000920_280 0.0738067997 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
7 Hb_003091_010 0.0750703797 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
8 Hb_000359_330 0.0760311995 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001754_240 0.0767958397 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
10 Hb_178968_100 0.0776301201 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
11 Hb_000640_220 0.0786399653 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
12 Hb_000923_040 0.0796266114 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
13 Hb_005656_210 0.0812133007 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
14 Hb_003142_070 0.0817266552 - - hypothetical protein F383_14657 [Gossypium arboreum]
15 Hb_011848_010 0.08184908 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
16 Hb_004450_060 0.0837050326 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
17 Hb_003849_060 0.084840573 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
18 Hb_008887_050 0.0877012356 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
19 Hb_004976_020 0.0898100881 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
20 Hb_000290_020 0.0901180855 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_006623_020 Hb_006623_020 Hb_000808_250 Hb_000808_250 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_003091_010 Hb_003091_010 Hb_006623_020--Hb_003091_010 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_000808_250--Hb_021422_010 Hb_000359_330 Hb_000359_330 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_003018_060--Hb_006960_050 Hb_003018_060--Hb_106552_050 Hb_000640_220 Hb_000640_220 Hb_003018_060--Hb_000640_220 Hb_006620_020 Hb_006620_020 Hb_003018_060--Hb_006620_020 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070 Hb_010968_010 Hb_010968_010 Hb_000920_280--Hb_010968_010 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.29 7.63406 12.4717 6.24777 25.5676 16.2601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.7162 13.0907 6.44854 5.56722 4.80539

CAGE analysis