Hb_006629_010

Information

Type -
Description -
Location Contig6629: 3189-6273
Sequence    

Annotation

kegg
ID tcc:TCM_044487
description Glutathione S-transferase 2 isoform 2
nr
ID XP_007010579.1
description Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
swissprot
ID P57108
description Glutathione S-transferase zeta class OS=Euphorbia esula PE=2 SV=1
trembl
ID A0A061FX53
description Glutathione S-transferase 2 isoform 3 OS=Theobroma cacao GN=TCM_044487 PE=3 SV=1
Gene Ontology
ID GO:0005737
description glutathione s-transferase zeta class

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006629_010 0.0 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
2 Hb_181328_010 0.1519569143 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002477_050 0.1582463396 - - unnamed protein product [Coffea canephora]
4 Hb_002974_050 0.1595440923 - - -
5 Hb_000051_170 0.1611971158 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_000991_070 0.1651924328 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
7 Hb_000825_030 0.1686694985 - - zinc binding dehydrogenase, putative [Ricinus communis]
8 Hb_038237_010 0.1717954317 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
9 Hb_005527_020 0.1763043677 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
10 Hb_106415_010 0.1776992678 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
11 Hb_006856_010 0.1782858595 - - hypothetical protein CISIN_1g019592mg [Citrus sinensis]
12 Hb_013358_090 0.1786686713 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
13 Hb_001014_110 0.1826168546 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
14 Hb_028707_080 0.1842487953 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
15 Hb_004117_160 0.1842833732 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
16 Hb_000359_140 0.185917694 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
17 Hb_099878_050 0.1900044718 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
18 Hb_027760_070 0.1904446532 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
19 Hb_007403_060 0.1909415475 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
20 Hb_002611_020 0.1916460089 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]

Gene co-expression network

sample Hb_006629_010 Hb_006629_010 Hb_181328_010 Hb_181328_010 Hb_006629_010--Hb_181328_010 Hb_002477_050 Hb_002477_050 Hb_006629_010--Hb_002477_050 Hb_002974_050 Hb_002974_050 Hb_006629_010--Hb_002974_050 Hb_000051_170 Hb_000051_170 Hb_006629_010--Hb_000051_170 Hb_000991_070 Hb_000991_070 Hb_006629_010--Hb_000991_070 Hb_000825_030 Hb_000825_030 Hb_006629_010--Hb_000825_030 Hb_002611_020 Hb_002611_020 Hb_181328_010--Hb_002611_020 Hb_013358_090 Hb_013358_090 Hb_181328_010--Hb_013358_090 Hb_002400_330 Hb_002400_330 Hb_181328_010--Hb_002400_330 Hb_106415_010 Hb_106415_010 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_050912_010 Hb_050912_010 Hb_181328_010--Hb_050912_010 Hb_000215_310 Hb_000215_310 Hb_002477_050--Hb_000215_310 Hb_143629_130 Hb_143629_130 Hb_002477_050--Hb_143629_130 Hb_099116_010 Hb_099116_010 Hb_002477_050--Hb_099116_010 Hb_001195_160 Hb_001195_160 Hb_002477_050--Hb_001195_160 Hb_004709_020 Hb_004709_020 Hb_002477_050--Hb_004709_020 Hb_002974_050--Hb_000991_070 Hb_001386_140 Hb_001386_140 Hb_002974_050--Hb_001386_140 Hb_002974_050--Hb_000825_030 Hb_006663_090 Hb_006663_090 Hb_002974_050--Hb_006663_090 Hb_005023_030 Hb_005023_030 Hb_002974_050--Hb_005023_030 Hb_011671_090 Hb_011671_090 Hb_000051_170--Hb_011671_090 Hb_000051_170--Hb_000991_070 Hb_156825_010 Hb_156825_010 Hb_000051_170--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_000051_170--Hb_001380_020 Hb_000087_030 Hb_000087_030 Hb_000051_170--Hb_000087_030 Hb_001546_050 Hb_001546_050 Hb_000051_170--Hb_001546_050 Hb_002067_120 Hb_002067_120 Hb_000991_070--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_000991_070--Hb_010565_010 Hb_000107_200 Hb_000107_200 Hb_000991_070--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_000991_070--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_000991_070--Hb_000606_080 Hb_000825_030--Hb_006663_090 Hb_038237_010 Hb_038237_010 Hb_000825_030--Hb_038237_010 Hb_006487_060 Hb_006487_060 Hb_000825_030--Hb_006487_060 Hb_000825_030--Hb_106415_010 Hb_000825_030--Hb_000991_070 Hb_152554_010 Hb_152554_010 Hb_000825_030--Hb_152554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1266 26.3633 9.30699 72.8317 37.3661 76.1339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.4871 13.5862 3.80785 34.5857 19.8971

CAGE analysis