Hb_006631_010

Information

Type -
Description -
Location Contig6631: 30278-31856
Sequence    

Annotation

kegg
ID tcc:TCM_006606
description Plasma membrane intrinsic protein 2,8 isoform 1
nr
ID ACV66986.1
description plasma membrane aquaporin 2 [Hevea brasiliensis]
swissprot
ID Q9ZVX8
description Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1
trembl
ID C9EA49
description Plasma membrane aquaporin 2 OS=Hevea brasiliensis GN=PIP2 PE=2 SV=1
Gene Ontology
ID GO:0016020
description probable aquaporin pip2-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53108: 30245-31893
cDNA
(Sanger)
(ID:Location)		 003_E11.ab1: 30253-31402 , 004_F15.ab1: 31012-31795 , 013_B05.ab1: 30247-31328 , 016_D12.ab1: 30244-31169 , 028_G09.ab1: 30249-30966 , 028_G18.ab1: 31031-31795 , 029_N20.ab1: 31290-31786 , 035_J23.ab1: 30249-31369 , 035_K16.ab1: 30253-31353 , 039_A15.ab1: 30247-31301 , 043_H09.ab1: 30247-31332 , 051_A10.ab1: 30247-31327 , 051_L18.ab1: 30244-31297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006631_010 0.0 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
2 Hb_000544_120 0.0942045102 - - PREDICTED: thymidylate kinase [Jatropha curcas]
3 Hb_002897_040 0.1020885034 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
4 Hb_000619_070 0.1080715421 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
5 Hb_000016_280 0.108218097 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
6 Hb_035360_010 0.1107594541 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_000608_340 0.1109458229 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
8 Hb_000173_210 0.1115516567 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
9 Hb_101151_020 0.1146874549 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000392_280 0.1189790185 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
11 Hb_003125_060 0.1201647827 - - PREDICTED: snurportin-1 [Jatropha curcas]
12 Hb_000779_040 0.1238959723 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
13 Hb_000116_570 0.124317278 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
14 Hb_001473_080 0.1269781251 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
15 Hb_004531_090 0.1277540828 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
16 Hb_002025_140 0.1289095734 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
17 Hb_001922_130 0.1292214739 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
18 Hb_001227_110 0.1295500473 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
19 Hb_010883_080 0.1297149964 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
20 Hb_000025_750 0.1300104021 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006631_010 Hb_006631_010 Hb_000544_120 Hb_000544_120 Hb_006631_010--Hb_000544_120 Hb_002897_040 Hb_002897_040 Hb_006631_010--Hb_002897_040 Hb_000619_070 Hb_000619_070 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_035360_010 Hb_035360_010 Hb_006631_010--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_006631_010--Hb_000608_340 Hb_000544_120--Hb_035360_010 Hb_000544_120--Hb_000619_070 Hb_000544_120--Hb_002897_040 Hb_000173_210 Hb_000173_210 Hb_000544_120--Hb_000173_210 Hb_000018_160 Hb_000018_160 Hb_000544_120--Hb_000018_160 Hb_002897_040--Hb_000173_210 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_000173_370 Hb_000173_370 Hb_002897_040--Hb_000173_370 Hb_000619_070--Hb_035360_010 Hb_000619_070--Hb_000608_340 Hb_000779_040 Hb_000779_040 Hb_000619_070--Hb_000779_040 Hb_003673_020 Hb_003673_020 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_000116_570 Hb_000116_570 Hb_000016_280--Hb_000116_570 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_001227_110 Hb_001227_110 Hb_000016_280--Hb_001227_110 Hb_000685_080 Hb_000685_080 Hb_000016_280--Hb_000685_080 Hb_003125_060 Hb_003125_060 Hb_000016_280--Hb_003125_060 Hb_010883_080 Hb_010883_080 Hb_000016_280--Hb_010883_080 Hb_035360_010--Hb_003673_020 Hb_000792_110 Hb_000792_110 Hb_035360_010--Hb_000792_110 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_035360_010--Hb_000211_090 Hb_000608_340--Hb_000779_040 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2780.36 1109.77 604.816 321.325 3973.14 2271.22
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
849.733 199.876 432.717 407.251 92.3388

CAGE analysis