Hb_006634_010

Information

Type -
Description -
Location Contig6634: 3592-6468
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53109: 5995-7817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_010 0.0 - - -
2 Hb_009189_060 0.0665984824 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
3 Hb_171273_010 0.1877601156 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
4 Hb_048207_010 0.2313552052 - - heat-shock protein, putative [Ricinus communis]
5 Hb_002426_010 0.2377108772 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_001031_060 0.2521712284 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
7 Hb_000510_220 0.254707672 - - -
8 Hb_008053_020 0.2559200782 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000796_060 0.256922019 - - Glycogenin-2 [Aegilops tauschii]
10 Hb_089341_010 0.3087682848 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
11 Hb_000398_130 0.3104837087 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
12 Hb_168893_010 0.3142699909 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
13 Hb_003772_040 0.3161259845 - - -
14 Hb_003647_120 0.3196813517 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
15 Hb_001279_230 0.320891568 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
16 Hb_009686_010 0.3272199276 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
17 Hb_000853_290 0.3279448739 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
18 Hb_053643_010 0.3288123107 - - Zinc finger protein GIS2 [Medicago truncatula]
19 Hb_003337_070 0.329773922 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
20 Hb_009189_030 0.3320855594 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]

Gene co-expression network

sample Hb_006634_010 Hb_006634_010 Hb_009189_060 Hb_009189_060 Hb_006634_010--Hb_009189_060 Hb_171273_010 Hb_171273_010 Hb_006634_010--Hb_171273_010 Hb_048207_010 Hb_048207_010 Hb_006634_010--Hb_048207_010 Hb_002426_010 Hb_002426_010 Hb_006634_010--Hb_002426_010 Hb_001031_060 Hb_001031_060 Hb_006634_010--Hb_001031_060 Hb_000510_220 Hb_000510_220 Hb_006634_010--Hb_000510_220 Hb_009189_060--Hb_002426_010 Hb_009189_060--Hb_000510_220 Hb_009189_060--Hb_171273_010 Hb_009189_060--Hb_001031_060 Hb_009189_060--Hb_048207_010 Hb_008053_020 Hb_008053_020 Hb_171273_010--Hb_008053_020 Hb_000796_060 Hb_000796_060 Hb_171273_010--Hb_000796_060 Hb_171273_010--Hb_048207_010 Hb_000035_310 Hb_000035_310 Hb_171273_010--Hb_000035_310 Hb_048207_010--Hb_000796_060 Hb_001104_040 Hb_001104_040 Hb_048207_010--Hb_001104_040 Hb_001279_230 Hb_001279_230 Hb_048207_010--Hb_001279_230 Hb_005730_100 Hb_005730_100 Hb_048207_010--Hb_005730_100 Hb_002426_010--Hb_000510_220 Hb_004483_020 Hb_004483_020 Hb_002426_010--Hb_004483_020 Hb_089341_010 Hb_089341_010 Hb_002426_010--Hb_089341_010 Hb_002426_010--Hb_001031_060 Hb_001501_040 Hb_001501_040 Hb_001031_060--Hb_001501_040 Hb_001031_060--Hb_000510_220 Hb_007879_010 Hb_007879_010 Hb_001031_060--Hb_007879_010 Hb_000510_220--Hb_001501_040 Hb_000510_220--Hb_004483_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0278898 0.0265666 0 0.0955637 0.0587739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis