Hb_006634_040

Information

Type -
Description -
Location Contig6634: 22554-24326
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN60490.1
description hypothetical protein VITISV_030841 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AQM5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_040 0.0 - - hypothetical protein VITISV_030841 [Vitis vinifera]
2 Hb_009803_040 0.1030090801 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
3 Hb_000933_150 0.1190637327 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
4 Hb_005656_210 0.1195803996 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
5 Hb_000661_160 0.1203708991 - - hexokinase [Manihot esculenta]
6 Hb_003788_050 0.1245827358 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
7 Hb_001484_060 0.1251405795 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
8 Hb_009111_040 0.1327349487 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
9 Hb_000331_290 0.1353915961 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000106_130 0.1375971238 - - unnamed protein product [Vitis vinifera]
11 Hb_000670_020 0.1420984473 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
12 Hb_001689_020 0.142379953 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
13 Hb_000211_110 0.1428094679 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
14 Hb_000920_280 0.1428123545 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
15 Hb_000076_270 0.1437535712 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
16 Hb_006096_040 0.1441269119 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
17 Hb_002267_090 0.1448800454 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
18 Hb_001124_120 0.1448812339 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
19 Hb_000358_250 0.1459353295 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
20 Hb_004032_060 0.1469143631 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]

Gene co-expression network

sample Hb_006634_040 Hb_006634_040 Hb_009803_040 Hb_009803_040 Hb_006634_040--Hb_009803_040 Hb_000933_150 Hb_000933_150 Hb_006634_040--Hb_000933_150 Hb_005656_210 Hb_005656_210 Hb_006634_040--Hb_005656_210 Hb_000661_160 Hb_000661_160 Hb_006634_040--Hb_000661_160 Hb_003788_050 Hb_003788_050 Hb_006634_040--Hb_003788_050 Hb_001484_060 Hb_001484_060 Hb_006634_040--Hb_001484_060 Hb_003025_020 Hb_003025_020 Hb_009803_040--Hb_003025_020 Hb_001124_120 Hb_001124_120 Hb_009803_040--Hb_001124_120 Hb_000076_270 Hb_000076_270 Hb_009803_040--Hb_000076_270 Hb_009803_040--Hb_003788_050 Hb_000429_200 Hb_000429_200 Hb_009803_040--Hb_000429_200 Hb_008887_050 Hb_008887_050 Hb_000933_150--Hb_008887_050 Hb_000676_050 Hb_000676_050 Hb_000933_150--Hb_000676_050 Hb_006096_040 Hb_006096_040 Hb_000933_150--Hb_006096_040 Hb_000933_150--Hb_001484_060 Hb_010968_010 Hb_010968_010 Hb_000933_150--Hb_010968_010 Hb_031527_100 Hb_031527_100 Hb_000933_150--Hb_031527_100 Hb_006623_020 Hb_006623_020 Hb_005656_210--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_005656_210--Hb_003018_060 Hb_001329_130 Hb_001329_130 Hb_005656_210--Hb_001329_130 Hb_001983_030 Hb_001983_030 Hb_005656_210--Hb_001983_030 Hb_005656_210--Hb_010968_010 Hb_000808_250 Hb_000808_250 Hb_005656_210--Hb_000808_250 Hb_000211_110 Hb_000211_110 Hb_000661_160--Hb_000211_110 Hb_000261_110 Hb_000261_110 Hb_000661_160--Hb_000261_110 Hb_009111_040 Hb_009111_040 Hb_000661_160--Hb_009111_040 Hb_000313_300 Hb_000313_300 Hb_000661_160--Hb_000313_300 Hb_000106_130 Hb_000106_130 Hb_000661_160--Hb_000106_130 Hb_004032_060 Hb_004032_060 Hb_000661_160--Hb_004032_060 Hb_000358_250 Hb_000358_250 Hb_003788_050--Hb_000358_250 Hb_089032_020 Hb_089032_020 Hb_003788_050--Hb_089032_020 Hb_003788_050--Hb_003025_020 Hb_000640_230 Hb_000640_230 Hb_003788_050--Hb_000640_230 Hb_003788_050--Hb_000076_270 Hb_000563_210 Hb_000563_210 Hb_001484_060--Hb_000563_210 Hb_001484_060--Hb_000676_050 Hb_001621_170 Hb_001621_170 Hb_001484_060--Hb_001621_170 Hb_001484_060--Hb_001124_120 Hb_002349_040 Hb_002349_040 Hb_001484_060--Hb_002349_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.336542 0.0842529 0.25954 0.233862 0.702741 0.283511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.431164 0.233221 0.0800335 0.143635 0.0891553

CAGE analysis