Hb_006634_060

Information

Type -
Description -
Location Contig6634: 29395-31759
Sequence    

Annotation

kegg
ID rcu:RCOM_0217990
description Leucoanthocyanidin dioxygenase, putative (EC:1.14.11.19)
nr
ID XP_012087843.1
description PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
swissprot
ID P51091
description Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1
trembl
ID A0A067JKC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25005 PE=3 SV=1
Gene Ontology
ID GO:0005506
description leucoanthocyanidin dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53110: 29397-31903 , PASA_asmbl_53111: 30348-30569
cDNA
(Sanger)
(ID:Location)		 016_D16.ab1: 29397-31043 , 021_K09.ab1: 29397-31014 , 027_I24.ab1: 29397-31041 , 048_E24.ab1: 29393-31046

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_060 0.0 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
2 Hb_000211_100 0.2101919374 - - PREDICTED: biotin synthase [Jatropha curcas]
3 Hb_005901_030 0.2170634664 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
4 Hb_021495_010 0.2214644233 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000678_010 0.2245943528 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
6 Hb_011485_030 0.227913099 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
7 Hb_003050_260 0.2303024742 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
8 Hb_002913_010 0.2343465746 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
9 Hb_027746_020 0.2412696287 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
10 Hb_177321_040 0.2413196674 - - hypothetical protein JCGZ_06328 [Jatropha curcas]
11 Hb_000359_200 0.241552947 - - triacylglycerol lipase, putative [Ricinus communis]
12 Hb_000684_120 0.2436537573 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
13 Hb_010812_070 0.2464588335 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
14 Hb_093458_020 0.2512457583 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
15 Hb_000296_010 0.2555034817 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
16 Hb_002411_060 0.2570323188 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
17 Hb_002837_050 0.2587286203 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
18 Hb_004324_390 0.2589394102 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
19 Hb_000181_270 0.259909094 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000566_130 0.2599637325 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006634_060 Hb_006634_060 Hb_000211_100 Hb_000211_100 Hb_006634_060--Hb_000211_100 Hb_005901_030 Hb_005901_030 Hb_006634_060--Hb_005901_030 Hb_021495_010 Hb_021495_010 Hb_006634_060--Hb_021495_010 Hb_000678_010 Hb_000678_010 Hb_006634_060--Hb_000678_010 Hb_011485_030 Hb_011485_030 Hb_006634_060--Hb_011485_030 Hb_003050_260 Hb_003050_260 Hb_006634_060--Hb_003050_260 Hb_011386_050 Hb_011386_050 Hb_000211_100--Hb_011386_050 Hb_005784_070 Hb_005784_070 Hb_000211_100--Hb_005784_070 Hb_010080_010 Hb_010080_010 Hb_000211_100--Hb_010080_010 Hb_000098_150 Hb_000098_150 Hb_000211_100--Hb_000098_150 Hb_000211_100--Hb_005901_030 Hb_004957_020 Hb_004957_020 Hb_000211_100--Hb_004957_020 Hb_005901_030--Hb_004957_020 Hb_004155_020 Hb_004155_020 Hb_005901_030--Hb_004155_020 Hb_000260_650 Hb_000260_650 Hb_005901_030--Hb_000260_650 Hb_005901_030--Hb_021495_010 Hb_000640_050 Hb_000640_050 Hb_005901_030--Hb_000640_050 Hb_021495_010--Hb_000640_050 Hb_001195_640 Hb_001195_640 Hb_021495_010--Hb_001195_640 Hb_010812_070 Hb_010812_070 Hb_021495_010--Hb_010812_070 Hb_021495_010--Hb_000211_100 Hb_021495_010--Hb_003050_260 Hb_002913_010 Hb_002913_010 Hb_000678_010--Hb_002913_010 Hb_005903_020 Hb_005903_020 Hb_000678_010--Hb_005903_020 Hb_000229_050 Hb_000229_050 Hb_000678_010--Hb_000229_050 Hb_000926_060 Hb_000926_060 Hb_000678_010--Hb_000926_060 Hb_011716_010 Hb_011716_010 Hb_000678_010--Hb_011716_010 Hb_000830_020 Hb_000830_020 Hb_000678_010--Hb_000830_020 Hb_000181_270 Hb_000181_270 Hb_011485_030--Hb_000181_270 Hb_004920_050 Hb_004920_050 Hb_011485_030--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_011485_030--Hb_000288_090 Hb_011485_030--Hb_005901_030 Hb_000566_130 Hb_000566_130 Hb_011485_030--Hb_000566_130 Hb_002518_200 Hb_002518_200 Hb_011485_030--Hb_002518_200 Hb_003050_260--Hb_010812_070 Hb_039021_010 Hb_039021_010 Hb_003050_260--Hb_039021_010 Hb_005144_210 Hb_005144_210 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58009 0.503327 33.5595 9.37731 3.06972 3.54828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6797 1.66226 0.552409 17.6128 3.63374

CAGE analysis