Hb_006634_070

Information

Type -
Description -
Location Contig6634: 46853-61665
Sequence    

Annotation

kegg
ID rcu:RCOM_0218300
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012087842.1
description PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
swissprot
ID Q8W4I7
description Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2
trembl
ID A0A067JWP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25004 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53113: 46863-61201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_070 0.0 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
2 Hb_006455_120 0.0491280971 - - n6-DNA-methyltransferase, putative [Ricinus communis]
3 Hb_023344_120 0.0554718656 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
4 Hb_011037_030 0.0579090681 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
5 Hb_001409_020 0.0597154415 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
6 Hb_000156_010 0.060607023 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
7 Hb_005144_160 0.0607166549 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
8 Hb_001248_060 0.0615445897 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009548_020 0.0619658319 - - structural constituent of cell wall, putative [Ricinus communis]
10 Hb_010618_010 0.0619794072 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_004619_030 0.065835741 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
12 Hb_005269_070 0.0658677956 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
13 Hb_011995_010 0.0665030899 - - dc50, putative [Ricinus communis]
14 Hb_000120_670 0.0685811454 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
15 Hb_022115_020 0.0690116125 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
16 Hb_021409_040 0.0699167854 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
17 Hb_000580_180 0.069988271 - - conserved hypothetical protein [Ricinus communis]
18 Hb_015934_040 0.0710932436 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
19 Hb_000603_150 0.071958031 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
20 Hb_000958_140 0.0722202944 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]

Gene co-expression network

sample Hb_006634_070 Hb_006634_070 Hb_006455_120 Hb_006455_120 Hb_006634_070--Hb_006455_120 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_011037_030 Hb_011037_030 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_000156_010 Hb_000156_010 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160 Hb_006455_120--Hb_011037_030 Hb_000300_500 Hb_000300_500 Hb_006455_120--Hb_000300_500 Hb_000603_150 Hb_000603_150 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_006455_120--Hb_000156_010 Hb_000676_250 Hb_000676_250 Hb_023344_120--Hb_000676_250 Hb_023344_120--Hb_006455_120 Hb_027380_130 Hb_027380_130 Hb_023344_120--Hb_027380_130 Hb_011995_010 Hb_011995_010 Hb_023344_120--Hb_011995_010 Hb_005269_070 Hb_005269_070 Hb_023344_120--Hb_005269_070 Hb_011037_030--Hb_000156_010 Hb_054865_150 Hb_054865_150 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_011037_030--Hb_105328_020 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_000156_010--Hb_003750_050 Hb_000156_010--Hb_054865_150 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050 Hb_005144_160--Hb_000580_180 Hb_007691_030 Hb_007691_030 Hb_005144_160--Hb_007691_030 Hb_002200_080 Hb_002200_080 Hb_005144_160--Hb_002200_080 Hb_003177_030 Hb_003177_030 Hb_005144_160--Hb_003177_030 Hb_002863_050 Hb_002863_050 Hb_005144_160--Hb_002863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2305 11.8878 11.4297 16.3645 15.4931 17.3031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3791 14.2548 19.3261 14.884 12.2355

CAGE analysis