Hb_006634_080

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig6634: 71764-73095
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10240g
description POPTRDRAFT_560923; hypothetical protein
nr
ID XP_012087841.1
description PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
swissprot
ID Q9SDW0
description Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1
trembl
ID A0A067JY09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25003 PE=4 SV=1
Gene Ontology
ID GO:0005634
description trihelix transcription factor gt-3b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_080 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
2 Hb_000996_200 0.0933481717 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
3 Hb_157980_010 0.1021761828 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
4 Hb_009083_010 0.102777812 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
5 Hb_174380_010 0.1056865259 - - kinase, putative [Ricinus communis]
6 Hb_005357_270 0.1103421588 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
7 Hb_000110_330 0.1173821545 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
8 Hb_117127_010 0.1178008125 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
9 Hb_000098_250 0.1194843533 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
10 Hb_000075_110 0.1197664316 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_002410_010 0.1218103159 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
12 Hb_165404_010 0.1235275674 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
13 Hb_002085_070 0.1264028502 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_012545_080 0.126516613 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
15 Hb_004459_110 0.1274678308 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
16 Hb_020648_020 0.1334019298 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
17 Hb_008667_030 0.1340904142 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
18 Hb_003556_070 0.1354602292 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_073119_010 0.1377396406 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
20 Hb_022206_030 0.1386633431 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006634_080 Hb_006634_080 Hb_000996_200 Hb_000996_200 Hb_006634_080--Hb_000996_200 Hb_157980_010 Hb_157980_010 Hb_006634_080--Hb_157980_010 Hb_009083_010 Hb_009083_010 Hb_006634_080--Hb_009083_010 Hb_174380_010 Hb_174380_010 Hb_006634_080--Hb_174380_010 Hb_005357_270 Hb_005357_270 Hb_006634_080--Hb_005357_270 Hb_000110_330 Hb_000110_330 Hb_006634_080--Hb_000110_330 Hb_012545_080 Hb_012545_080 Hb_000996_200--Hb_012545_080 Hb_000996_200--Hb_005357_270 Hb_000996_200--Hb_157980_010 Hb_004459_110 Hb_004459_110 Hb_000996_200--Hb_004459_110 Hb_004785_120 Hb_004785_120 Hb_000996_200--Hb_004785_120 Hb_002085_070 Hb_002085_070 Hb_157980_010--Hb_002085_070 Hb_111985_060 Hb_111985_060 Hb_157980_010--Hb_111985_060 Hb_001514_100 Hb_001514_100 Hb_157980_010--Hb_001514_100 Hb_157980_010--Hb_004459_110 Hb_022206_030 Hb_022206_030 Hb_009083_010--Hb_022206_030 Hb_009083_010--Hb_174380_010 Hb_009083_010--Hb_005357_270 Hb_000133_060 Hb_000133_060 Hb_009083_010--Hb_000133_060 Hb_000252_080 Hb_000252_080 Hb_009083_010--Hb_000252_080 Hb_117127_010 Hb_117127_010 Hb_174380_010--Hb_117127_010 Hb_000338_030 Hb_000338_030 Hb_174380_010--Hb_000338_030 Hb_174380_010--Hb_000133_060 Hb_174380_010--Hb_012545_080 Hb_005357_270--Hb_012545_080 Hb_005357_270--Hb_000110_330 Hb_005357_270--Hb_174380_010 Hb_012404_050 Hb_012404_050 Hb_000110_330--Hb_012404_050 Hb_041145_010 Hb_041145_010 Hb_000110_330--Hb_041145_010 Hb_000110_330--Hb_012545_080 Hb_007407_010 Hb_007407_010 Hb_000110_330--Hb_007407_010 Hb_000110_330--Hb_000133_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0832861 15.5079 4.83418 3.35778 0.0340801 0.0647165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.189404 0 5.33551 0.522907

CAGE analysis