Hb_006634_100

Information

Type -
Description -
Location Contig6634: 104006-107197
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53116: 104381-107460 , PASA_asmbl_53117: 104830-105437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006634_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000935_080 0.1377469098 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_004163_030 0.13779453 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
4 Hb_003050_360 0.1409488746 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
5 Hb_005622_020 0.1448015453 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
6 Hb_002662_040 0.1493556946 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
7 Hb_006951_030 0.1577818835 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
8 Hb_000088_240 0.1592149585 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_001377_530 0.1611353995 - - NC domain-containing family protein [Populus trichocarpa]
10 Hb_000032_410 0.1617772082 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
11 Hb_003894_030 0.1641720493 - - plant sec1, putative [Ricinus communis]
12 Hb_002627_040 0.1644283274 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
13 Hb_004545_080 0.1644433259 - - protein with unknown function [Ricinus communis]
14 Hb_003271_040 0.1691111323 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
15 Hb_000527_080 0.1692318849 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
16 Hb_000526_010 0.1717735412 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
17 Hb_001123_310 0.1723835519 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_001141_050 0.1724838126 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
19 Hb_000025_540 0.1730230396 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
20 Hb_012180_060 0.1741653269 - - peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006634_100 Hb_006634_100 Hb_000935_080 Hb_000935_080 Hb_006634_100--Hb_000935_080 Hb_004163_030 Hb_004163_030 Hb_006634_100--Hb_004163_030 Hb_003050_360 Hb_003050_360 Hb_006634_100--Hb_003050_360 Hb_005622_020 Hb_005622_020 Hb_006634_100--Hb_005622_020 Hb_002662_040 Hb_002662_040 Hb_006634_100--Hb_002662_040 Hb_006951_030 Hb_006951_030 Hb_006634_100--Hb_006951_030 Hb_000088_240 Hb_000088_240 Hb_000935_080--Hb_000088_240 Hb_000941_060 Hb_000941_060 Hb_000935_080--Hb_000941_060 Hb_000935_080--Hb_006951_030 Hb_002942_120 Hb_002942_120 Hb_000935_080--Hb_002942_120 Hb_000935_080--Hb_004163_030 Hb_000526_010 Hb_000526_010 Hb_004163_030--Hb_000526_010 Hb_001141_050 Hb_001141_050 Hb_004163_030--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_004163_030--Hb_000230_190 Hb_004155_020 Hb_004155_020 Hb_004163_030--Hb_004155_020 Hb_004163_030--Hb_002662_040 Hb_000689_050 Hb_000689_050 Hb_003050_360--Hb_000689_050 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_004545_080 Hb_004545_080 Hb_003050_360--Hb_004545_080 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_000108_240 Hb_000108_240 Hb_005622_020--Hb_000108_240 Hb_004041_050 Hb_004041_050 Hb_005622_020--Hb_004041_050 Hb_005622_020--Hb_003050_360 Hb_002028_110 Hb_002028_110 Hb_005622_020--Hb_002028_110 Hb_000193_340 Hb_000193_340 Hb_005622_020--Hb_000193_340 Hb_002662_040--Hb_000526_010 Hb_000244_150 Hb_000244_150 Hb_002662_040--Hb_000244_150 Hb_002662_040--Hb_000935_080 Hb_011828_040 Hb_011828_040 Hb_002662_040--Hb_011828_040 Hb_003894_030 Hb_003894_030 Hb_006951_030--Hb_003894_030 Hb_006951_030--Hb_000088_240 Hb_006951_030--Hb_004155_020 Hb_000406_030 Hb_000406_030 Hb_006951_030--Hb_000406_030 Hb_003271_040 Hb_003271_040 Hb_006951_030--Hb_003271_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.699175 2.43204 12.8372 8.03224 1.32654 0.417329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.369924 0.476212 3.56969 2.65306 5.85052

CAGE analysis