Hb_006637_070

Information

Type -
Description -
Location Contig6637: 61363-62931
Sequence    

Annotation

kegg
ID rcu:RCOM_0760970
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082370.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16511 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53126: 56059-60512 , PASA_asmbl_53127: 56043-60460 , PASA_asmbl_53128: 57565-60460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006637_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
2 Hb_003994_120 0.0855925601 - - PREDICTED: uncharacterized protein LOC105130433 isoform X1 [Populus euphratica]
3 Hb_001489_090 0.0940017127 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
4 Hb_003465_030 0.0947174573 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006570_080 0.0993153466 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
6 Hb_023001_040 0.100866217 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
7 Hb_007423_050 0.1010029842 - - PREDICTED: cysteine-rich receptor-like protein kinase 3 [Jatropha curcas]
8 Hb_000556_120 0.1031615414 - - Spastin, putative [Ricinus communis]
9 Hb_005588_060 0.1034411621 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
10 Hb_001301_150 0.1067890579 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
11 Hb_000173_280 0.1081984151 - - Speckle-type POZ protein, putative [Ricinus communis]
12 Hb_000903_060 0.1089892772 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
13 Hb_010921_050 0.110128469 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
14 Hb_007472_070 0.1110979323 - - cir, putative [Ricinus communis]
15 Hb_003058_120 0.1118105516 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
16 Hb_000347_250 0.112230707 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
17 Hb_001396_200 0.1134360678 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
18 Hb_002007_150 0.1136376552 - - -
19 Hb_003020_280 0.1144129257 - - hypothetical protein PRUPE_ppa026521mg [Prunus persica]
20 Hb_000948_160 0.1144916667 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006637_070 Hb_006637_070 Hb_003994_120 Hb_003994_120 Hb_006637_070--Hb_003994_120 Hb_001489_090 Hb_001489_090 Hb_006637_070--Hb_001489_090 Hb_003465_030 Hb_003465_030 Hb_006637_070--Hb_003465_030 Hb_006570_080 Hb_006570_080 Hb_006637_070--Hb_006570_080 Hb_023001_040 Hb_023001_040 Hb_006637_070--Hb_023001_040 Hb_007423_050 Hb_007423_050 Hb_006637_070--Hb_007423_050 Hb_004586_420 Hb_004586_420 Hb_003994_120--Hb_004586_420 Hb_003994_120--Hb_023001_040 Hb_005914_170 Hb_005914_170 Hb_003994_120--Hb_005914_170 Hb_003058_120 Hb_003058_120 Hb_003994_120--Hb_003058_120 Hb_006452_100 Hb_006452_100 Hb_003994_120--Hb_006452_100 Hb_001489_090--Hb_003465_030 Hb_000347_240 Hb_000347_240 Hb_001489_090--Hb_000347_240 Hb_001195_200 Hb_001195_200 Hb_001489_090--Hb_001195_200 Hb_000948_160 Hb_000948_160 Hb_001489_090--Hb_000948_160 Hb_008453_030 Hb_008453_030 Hb_001489_090--Hb_008453_030 Hb_001489_090--Hb_004586_420 Hb_000917_230 Hb_000917_230 Hb_003465_030--Hb_000917_230 Hb_000352_310 Hb_000352_310 Hb_003465_030--Hb_000352_310 Hb_001671_100 Hb_001671_100 Hb_003465_030--Hb_001671_100 Hb_000173_280 Hb_000173_280 Hb_003465_030--Hb_000173_280 Hb_001876_050 Hb_001876_050 Hb_003465_030--Hb_001876_050 Hb_002936_010 Hb_002936_010 Hb_006570_080--Hb_002936_010 Hb_001359_050 Hb_001359_050 Hb_006570_080--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_006570_080--Hb_005588_060 Hb_006570_080--Hb_000173_280 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_025336_020 Hb_025336_020 Hb_007423_050--Hb_025336_020 Hb_000008_420 Hb_000008_420 Hb_007423_050--Hb_000008_420 Hb_011671_270 Hb_011671_270 Hb_007423_050--Hb_011671_270 Hb_000690_150 Hb_000690_150 Hb_007423_050--Hb_000690_150 Hb_000088_270 Hb_000088_270 Hb_007423_050--Hb_000088_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.890932 0.907147 0.704797 1.32346 0.931141 0.397484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20851 1.35604 0.665804 1.54846 0.976762

CAGE analysis