Hb_006642_030

Information

Type -
Description -
Location Contig6642: 8689-9354
Sequence    

Annotation

kegg
ID rcu:RCOM_0516660
description Oxalate oxidase 2 precursor, putative (EC:1.2.3.4)
nr
ID XP_012066488.1
description PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
swissprot
ID Q9SR72
description Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1
trembl
ID A0A067L2X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23677 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 3 member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006642_030 0.0 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
2 Hb_000311_030 0.1493174131 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
3 Hb_161994_040 0.1888412207 - - -
4 Hb_000703_110 0.2020127508 - - -
5 Hb_000311_040 0.2027699574 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
6 Hb_008054_050 0.2061830866 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
7 Hb_002344_130 0.216814472 - - PREDICTED: copper transporter 5 [Jatropha curcas]
8 Hb_000111_030 0.2256516394 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
9 Hb_003551_010 0.2264995176 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
10 Hb_011287_040 0.2283185304 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
11 Hb_182713_020 0.2288498591 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
12 Hb_034507_040 0.2290196434 - - peptide transporter, putative [Ricinus communis]
13 Hb_001377_280 0.2313373532 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
14 Hb_001217_040 0.2323277249 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
15 Hb_066913_010 0.2360515231 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
16 Hb_128473_010 0.2370118517 - - -
17 Hb_155541_020 0.2374515477 - - -
18 Hb_000739_200 0.2374767905 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
19 Hb_000291_160 0.2387206028 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
20 Hb_068569_010 0.2413678035 - - -

Gene co-expression network

sample Hb_006642_030 Hb_006642_030 Hb_000311_030 Hb_000311_030 Hb_006642_030--Hb_000311_030 Hb_161994_040 Hb_161994_040 Hb_006642_030--Hb_161994_040 Hb_000703_110 Hb_000703_110 Hb_006642_030--Hb_000703_110 Hb_000311_040 Hb_000311_040 Hb_006642_030--Hb_000311_040 Hb_008054_050 Hb_008054_050 Hb_006642_030--Hb_008054_050 Hb_002344_130 Hb_002344_130 Hb_006642_030--Hb_002344_130 Hb_000311_030--Hb_161994_040 Hb_000311_030--Hb_008054_050 Hb_065841_010 Hb_065841_010 Hb_000311_030--Hb_065841_010 Hb_068569_010 Hb_068569_010 Hb_000311_030--Hb_068569_010 Hb_013358_100 Hb_013358_100 Hb_000311_030--Hb_013358_100 Hb_161994_040--Hb_008054_050 Hb_161994_040--Hb_065841_010 Hb_161994_040--Hb_013358_100 Hb_145317_010 Hb_145317_010 Hb_161994_040--Hb_145317_010 Hb_000703_110--Hb_008054_050 Hb_000245_080 Hb_000245_080 Hb_000703_110--Hb_000245_080 Hb_000703_110--Hb_000311_030 Hb_000111_030 Hb_000111_030 Hb_000703_110--Hb_000111_030 Hb_011287_040 Hb_011287_040 Hb_000703_110--Hb_011287_040 Hb_001195_410 Hb_001195_410 Hb_000311_040--Hb_001195_410 Hb_034507_040 Hb_034507_040 Hb_000311_040--Hb_034507_040 Hb_000816_190 Hb_000816_190 Hb_000311_040--Hb_000816_190 Hb_000291_160 Hb_000291_160 Hb_000311_040--Hb_000291_160 Hb_011918_010 Hb_011918_010 Hb_000311_040--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_000311_040--Hb_008185_020 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040 Hb_000003_540 Hb_000003_540 Hb_002344_130--Hb_000003_540 Hb_002344_130--Hb_000111_030 Hb_000023_290 Hb_000023_290 Hb_002344_130--Hb_000023_290 Hb_002344_130--Hb_000245_080 Hb_145629_010 Hb_145629_010 Hb_002344_130--Hb_145629_010 Hb_001747_030 Hb_001747_030 Hb_002344_130--Hb_001747_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60758 1.30729 0.323271 6.81464 0.689152 1.30738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.780932 0.954906 0.362968 0.417232 0

CAGE analysis