Hb_006643_020

Information

Type -
Description -
Location Contig6643: 11898-15498
Sequence    

Annotation

kegg
ID rcu:RCOM_0455450
description hypothetical protein
nr
ID XP_012065202.1
description PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LH29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006643_020 0.0 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
2 Hb_006060_020 0.093074448 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
3 Hb_001396_110 0.1135512054 - - DNA primase large subunit, putative [Ricinus communis]
4 Hb_000215_320 0.1149219503 - - phosphofructokinase [Hevea brasiliensis]
5 Hb_001911_040 0.1186469288 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
6 Hb_085972_010 0.1236883655 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
7 Hb_011360_050 0.1242618445 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
8 Hb_000983_050 0.1242683423 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_016734_080 0.125606822 - - PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Jatropha curcas]
10 Hb_001221_110 0.1266780416 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
11 Hb_000045_300 0.1290989682 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
12 Hb_007943_050 0.1299108584 - - peroxiredoxin, putative [Ricinus communis]
13 Hb_172632_050 0.1301521429 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
14 Hb_000538_240 0.1318315704 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
15 Hb_011671_480 0.13185463 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001189_040 0.132147725 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
17 Hb_009627_030 0.1324412374 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
18 Hb_000802_090 0.133895181 - - ornithine aminotransferase, putative [Ricinus communis]
19 Hb_033594_080 0.134065053 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
20 Hb_005146_080 0.1345836604 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006643_020 Hb_006643_020 Hb_006060_020 Hb_006060_020 Hb_006643_020--Hb_006060_020 Hb_001396_110 Hb_001396_110 Hb_006643_020--Hb_001396_110 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_001911_040 Hb_001911_040 Hb_006643_020--Hb_001911_040 Hb_085972_010 Hb_085972_010 Hb_006643_020--Hb_085972_010 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_000723_230 Hb_000723_230 Hb_006060_020--Hb_000723_230 Hb_006637_030 Hb_006637_030 Hb_006060_020--Hb_006637_030 Hb_026198_010 Hb_026198_010 Hb_006060_020--Hb_026198_010 Hb_053709_050 Hb_053709_050 Hb_006060_020--Hb_053709_050 Hb_000555_100 Hb_000555_100 Hb_006060_020--Hb_000555_100 Hb_187679_010 Hb_187679_010 Hb_001396_110--Hb_187679_010 Hb_004450_050 Hb_004450_050 Hb_001396_110--Hb_004450_050 Hb_008226_060 Hb_008226_060 Hb_001396_110--Hb_008226_060 Hb_000357_110 Hb_000357_110 Hb_001396_110--Hb_000357_110 Hb_001396_110--Hb_085972_010 Hb_000890_150 Hb_000890_150 Hb_000215_320--Hb_000890_150 Hb_033594_080 Hb_033594_080 Hb_000215_320--Hb_033594_080 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000538_230 Hb_000538_230 Hb_000215_320--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_011671_480 Hb_011671_480 Hb_001911_040--Hb_011671_480 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_000538_240 Hb_000538_240 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001829_040 Hb_001829_040 Hb_001911_040--Hb_001829_040 Hb_001911_040--Hb_000357_110 Hb_085972_010--Hb_001911_040 Hb_085972_010--Hb_001829_040 Hb_000022_050 Hb_000022_050 Hb_085972_010--Hb_000022_050 Hb_005686_120 Hb_005686_120 Hb_085972_010--Hb_005686_120 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.191057 0.712483 0.512785 0.833628 0.156115 0.382933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.448649 0.529338 0.326756 0.424793 0.145347

CAGE analysis