Hb_006647_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig6647: 16680-19531
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12520g
description hypothetical protein
nr
ID XP_012079066.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9LVQ7
description Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1
trembl
ID A0A067K9Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12254 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53150: 15963-19501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006647_020 0.0 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_003787_020 0.0830595409 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
3 Hb_002006_090 0.0940649053 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
4 Hb_000111_360 0.1018375175 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002056_060 0.1052224116 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
6 Hb_000116_010 0.1075471341 - - isocitrate dehydrogenase, putative [Ricinus communis]
7 Hb_000406_120 0.1092045201 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
8 Hb_000343_130 0.1095614506 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
9 Hb_000063_140 0.1110999607 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
10 Hb_005699_070 0.1126034099 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
11 Hb_000001_140 0.112884129 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
12 Hb_031862_110 0.1134425364 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_002518_140 0.1139851583 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
14 Hb_001199_050 0.1143502529 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
15 Hb_000592_020 0.1144728363 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
16 Hb_004410_100 0.1164357807 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
17 Hb_002163_020 0.1175604201 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
18 Hb_000307_030 0.118774261 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
19 Hb_010172_050 0.1191417849 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
20 Hb_126643_020 0.1194370281 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006647_020 Hb_006647_020 Hb_003787_020 Hb_003787_020 Hb_006647_020--Hb_003787_020 Hb_002006_090 Hb_002006_090 Hb_006647_020--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_006647_020--Hb_000111_360 Hb_002056_060 Hb_002056_060 Hb_006647_020--Hb_002056_060 Hb_000116_010 Hb_000116_010 Hb_006647_020--Hb_000116_010 Hb_000406_120 Hb_000406_120 Hb_006647_020--Hb_000406_120 Hb_000030_150 Hb_000030_150 Hb_003787_020--Hb_000030_150 Hb_003787_020--Hb_002006_090 Hb_061802_020 Hb_061802_020 Hb_003787_020--Hb_061802_020 Hb_007924_020 Hb_007924_020 Hb_003787_020--Hb_007924_020 Hb_000614_230 Hb_000614_230 Hb_003787_020--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_002006_090--Hb_001329_300 Hb_002006_090--Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_002006_090--Hb_008695_210 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_000754_040 Hb_000754_040 Hb_000111_360--Hb_000754_040 Hb_000111_360--Hb_006915_050 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_000111_360--Hb_002006_090 Hb_001277_330 Hb_001277_330 Hb_000111_360--Hb_001277_330 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_003976_030 Hb_003976_030 Hb_000116_010--Hb_003976_030 Hb_000063_140 Hb_000063_140 Hb_000116_010--Hb_000063_140 Hb_001617_050 Hb_001617_050 Hb_000116_010--Hb_001617_050 Hb_001892_020 Hb_001892_020 Hb_000116_010--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_000116_010--Hb_004204_170 Hb_000406_120--Hb_000125_030 Hb_000141_020 Hb_000141_020 Hb_000406_120--Hb_000141_020 Hb_002045_180 Hb_002045_180 Hb_000406_120--Hb_002045_180 Hb_010407_180 Hb_010407_180 Hb_000406_120--Hb_010407_180 Hb_000406_120--Hb_002056_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.7782 20.8098 12.3711 14.6921 21.5037 18.7622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8308 38.9891 76.9562 19.1828 11.8683

CAGE analysis