Hb_006648_030

Information

Type -
Description -
Location Contig6648: 73376-75396
Sequence    

Annotation

kegg
ID rcu:RCOM_0174110
description Indole-3-acetic acid-amido synthetase GH3.3, putative
nr
ID XP_002527466.1
description Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
swissprot
ID O82333
description Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1
trembl
ID B9SN97
description Indole-3-acetic acid-amido synthetase GH3.3, putative OS=Ricinus communis GN=RCOM_0174110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53151: 73424-75462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006648_030 0.0 - - Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
2 Hb_125201_010 0.0859168304 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
3 Hb_009707_010 0.1008373873 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
4 Hb_000338_020 0.1021802438 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
5 Hb_157957_010 0.1037879942 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
6 Hb_027506_060 0.1079807933 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
7 Hb_064692_010 0.1087729689 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_004586_120 0.1091629696 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
9 Hb_041534_010 0.1108597765 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
10 Hb_002922_010 0.1124497859 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
11 Hb_025477_020 0.1143728487 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
12 Hb_000322_020 0.1149137613 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
13 Hb_000086_600 0.1152861113 - - -
14 Hb_114932_010 0.1181597751 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_005618_020 0.1223853514 - - hypothetical protein RCOM_1342750 [Ricinus communis]
16 Hb_005248_020 0.1241214746 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
17 Hb_000529_050 0.1255464398 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
18 Hb_000904_090 0.1284203624 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
19 Hb_000313_190 0.1286360541 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
20 Hb_001257_040 0.1292036378 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]

Gene co-expression network

sample Hb_006648_030 Hb_006648_030 Hb_125201_010 Hb_125201_010 Hb_006648_030--Hb_125201_010 Hb_009707_010 Hb_009707_010 Hb_006648_030--Hb_009707_010 Hb_000338_020 Hb_000338_020 Hb_006648_030--Hb_000338_020 Hb_157957_010 Hb_157957_010 Hb_006648_030--Hb_157957_010 Hb_027506_060 Hb_027506_060 Hb_006648_030--Hb_027506_060 Hb_064692_010 Hb_064692_010 Hb_006648_030--Hb_064692_010 Hb_125201_010--Hb_009707_010 Hb_004586_120 Hb_004586_120 Hb_125201_010--Hb_004586_120 Hb_125201_010--Hb_000338_020 Hb_005618_020 Hb_005618_020 Hb_125201_010--Hb_005618_020 Hb_125201_010--Hb_157957_010 Hb_114932_010 Hb_114932_010 Hb_125201_010--Hb_114932_010 Hb_009707_010--Hb_114932_010 Hb_009707_010--Hb_000338_020 Hb_000086_600 Hb_000086_600 Hb_009707_010--Hb_000086_600 Hb_000904_090 Hb_000904_090 Hb_009707_010--Hb_000904_090 Hb_009683_060 Hb_009683_060 Hb_009707_010--Hb_009683_060 Hb_000338_020--Hb_114932_010 Hb_000338_020--Hb_064692_010 Hb_000338_020--Hb_009683_060 Hb_167802_010 Hb_167802_010 Hb_000338_020--Hb_167802_010 Hb_034581_010 Hb_034581_010 Hb_157957_010--Hb_034581_010 Hb_036754_040 Hb_036754_040 Hb_157957_010--Hb_036754_040 Hb_110356_010 Hb_110356_010 Hb_157957_010--Hb_110356_010 Hb_000359_230 Hb_000359_230 Hb_157957_010--Hb_000359_230 Hb_002548_030 Hb_002548_030 Hb_157957_010--Hb_002548_030 Hb_157957_010--Hb_064692_010 Hb_034642_010 Hb_034642_010 Hb_027506_060--Hb_034642_010 Hb_027506_060--Hb_125201_010 Hb_047955_010 Hb_047955_010 Hb_027506_060--Hb_047955_010 Hb_000032_150 Hb_000032_150 Hb_027506_060--Hb_000032_150 Hb_001257_040 Hb_001257_040 Hb_027506_060--Hb_001257_040 Hb_027506_060--Hb_000086_600 Hb_041534_010 Hb_041534_010 Hb_064692_010--Hb_041534_010 Hb_013591_010 Hb_013591_010 Hb_064692_010--Hb_013591_010 Hb_137612_010 Hb_137612_010 Hb_064692_010--Hb_137612_010 Hb_002422_020 Hb_002422_020 Hb_064692_010--Hb_002422_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.1074 1.85901 1.80324 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.151312 0.0318777 0.0421457

CAGE analysis