Hb_006649_050

Information

Type -
Description -
Location Contig6649: 11110-24959
Sequence    

Annotation

kegg
ID rcu:RCOM_1095570
description rrm/rnp domain, putative
nr
ID XP_012081373.1
description PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
swissprot
ID Q9LVX1
description Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1
trembl
ID A0A067LAB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09576 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 41-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53155: 11237-15685 , PASA_asmbl_53156: 20687-22661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006649_050 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
2 Hb_009767_110 0.0518462673 - - -
3 Hb_000165_250 0.0585798607 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
4 Hb_002725_120 0.0593105632 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
5 Hb_004225_050 0.0608964189 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
6 Hb_001198_100 0.0618384253 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
7 Hb_000291_050 0.064509656 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
8 Hb_002234_170 0.0669894137 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
9 Hb_044728_010 0.0707173199 - - -
10 Hb_001369_730 0.07181934 - - F5O11.10, putative isoform 1 [Theobroma cacao]
11 Hb_002942_100 0.0720961437 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
12 Hb_000029_050 0.0722275608 - - expressed protein, putative [Ricinus communis]
13 Hb_005496_130 0.0730062572 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
14 Hb_172632_080 0.0730686932 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
15 Hb_008554_130 0.0754940159 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
16 Hb_001538_130 0.0757119547 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001799_180 0.0759023751 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_000060_090 0.0761745071 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
19 Hb_001675_180 0.0766142939 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
20 Hb_009545_100 0.0769766563 - - PREDICTED: protein OBERON 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006649_050 Hb_006649_050 Hb_009767_110 Hb_009767_110 Hb_006649_050--Hb_009767_110 Hb_000165_250 Hb_000165_250 Hb_006649_050--Hb_000165_250 Hb_002725_120 Hb_002725_120 Hb_006649_050--Hb_002725_120 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_001198_100 Hb_001198_100 Hb_006649_050--Hb_001198_100 Hb_000291_050 Hb_000291_050 Hb_006649_050--Hb_000291_050 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_009767_110--Hb_001198_100 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_000029_050 Hb_000029_050 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000165_250--Hb_000291_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_002725_120--Hb_005496_130 Hb_002725_120--Hb_000165_250 Hb_028912_050 Hb_028912_050 Hb_004225_050--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_004225_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_001198_100--Hb_000028_480 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_005779_080 Hb_005779_080 Hb_000291_050--Hb_005779_080 Hb_000291_050--Hb_005496_130 Hb_000291_050--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.35625 6.62269 3.07139 5.03605 7.19537 7.80877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64186 6.55906 8.93256 4.5327 7.55178

CAGE analysis