Hb_006649_060

Information

Type -
Description -
Location Contig6649: 25759-28929
Sequence    

Annotation

kegg
ID rcu:RCOM_1095560
description hypothetical protein
nr
ID XP_002524654.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M3G7
description Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1
trembl
ID B9SF85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1095560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53158: 27390-28502 , PASA_asmbl_53159: 28509-29384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006649_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007586_030 0.0630356336 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
3 Hb_002150_030 0.0689788395 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
4 Hb_001541_020 0.0693122078 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
5 Hb_000031_050 0.0718470303 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
6 Hb_022408_010 0.0751933915 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
7 Hb_183963_030 0.0757987891 - - DNA binding protein, putative [Ricinus communis]
8 Hb_001797_050 0.0774298788 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
9 Hb_000107_500 0.07878769 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
10 Hb_009411_010 0.0790364352 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
11 Hb_004162_280 0.0806889913 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
12 Hb_000977_180 0.0819928006 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
13 Hb_000529_260 0.0836843109 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
14 Hb_124315_020 0.0836851428 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000514_060 0.0837473666 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
16 Hb_007757_110 0.0838591276 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
17 Hb_000780_220 0.0847748691 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
18 Hb_123777_030 0.0850802607 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
19 Hb_000025_360 0.0857302558 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_000390_070 0.0858684877 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006649_060 Hb_006649_060 Hb_007586_030 Hb_007586_030 Hb_006649_060--Hb_007586_030 Hb_002150_030 Hb_002150_030 Hb_006649_060--Hb_002150_030 Hb_001541_020 Hb_001541_020 Hb_006649_060--Hb_001541_020 Hb_000031_050 Hb_000031_050 Hb_006649_060--Hb_000031_050 Hb_022408_010 Hb_022408_010 Hb_006649_060--Hb_022408_010 Hb_183963_030 Hb_183963_030 Hb_006649_060--Hb_183963_030 Hb_000005_380 Hb_000005_380 Hb_007586_030--Hb_000005_380 Hb_000244_250 Hb_000244_250 Hb_007586_030--Hb_000244_250 Hb_000977_180 Hb_000977_180 Hb_007586_030--Hb_000977_180 Hb_123777_030 Hb_123777_030 Hb_007586_030--Hb_123777_030 Hb_007586_030--Hb_002150_030 Hb_007108_030 Hb_007108_030 Hb_002150_030--Hb_007108_030 Hb_002150_030--Hb_000977_180 Hb_001797_050 Hb_001797_050 Hb_002150_030--Hb_001797_050 Hb_009411_010 Hb_009411_010 Hb_002150_030--Hb_009411_010 Hb_001541_020--Hb_022408_010 Hb_000107_500 Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220 Hb_006573_200 Hb_006573_200 Hb_000031_050--Hb_006573_200 Hb_000077_230 Hb_000077_230 Hb_000031_050--Hb_000077_230 Hb_004204_080 Hb_004204_080 Hb_000031_050--Hb_004204_080 Hb_007757_110 Hb_007757_110 Hb_000031_050--Hb_007757_110 Hb_124315_020 Hb_124315_020 Hb_000031_050--Hb_124315_020 Hb_022408_010--Hb_000244_250 Hb_002255_050 Hb_002255_050 Hb_022408_010--Hb_002255_050 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_022408_010--Hb_000107_500 Hb_002188_110 Hb_002188_110 Hb_183963_030--Hb_002188_110 Hb_000025_360 Hb_000025_360 Hb_183963_030--Hb_000025_360 Hb_000959_040 Hb_000959_040 Hb_183963_030--Hb_000959_040 Hb_010578_060 Hb_010578_060 Hb_183963_030--Hb_010578_060 Hb_004128_050 Hb_004128_050 Hb_183963_030--Hb_004128_050 Hb_001247_070 Hb_001247_070 Hb_183963_030--Hb_001247_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1743 34.5817 8.04979 10.3431 47.8752 45.5847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4247 16.6993 30.159 15.787 19.2694

CAGE analysis