Hb_006649_070

Information

Type -
Description -
Location Contig6649: 36052-38376
Sequence    

Annotation

kegg
ID -
description -
nr
ID AFK34875.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3S3N3
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0016616
description cinnamoyl- reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53165: 36007-55846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006649_070 0.0 - - unknown [Lotus japonicus]
2 Hb_004117_350 0.2188608701 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
3 Hb_018202_030 0.2224732715 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
4 Hb_012146_030 0.2404431075 - - -
5 Hb_006132_070 0.274448881 - - phosphate transporter [Manihot esculenta]
6 Hb_029610_010 0.2824465739 - - caffeic acid 3-O-methyltransferase [Hevea brasiliensis]
7 Hb_006054_050 0.2844188226 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
8 Hb_002701_110 0.2880301748 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
9 Hb_006637_080 0.2897732055 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
10 Hb_000296_080 0.2925707074 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
11 Hb_050953_010 0.2943728736 - - PREDICTED: uncharacterized protein LOC105779031 [Gossypium raimondii]
12 Hb_002217_260 0.2987585456 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
13 Hb_000107_570 0.3055789208 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
14 Hb_007313_060 0.3055987702 - - PREDICTED: paramyosin [Jatropha curcas]
15 Hb_004680_080 0.3058805167 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_154141_010 0.3086257363 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
17 Hb_000362_020 0.3093749748 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
18 Hb_002639_140 0.3115291496 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
19 Hb_007894_220 0.3117986917 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
20 Hb_001951_180 0.3122228558 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006649_070 Hb_006649_070 Hb_004117_350 Hb_004117_350 Hb_006649_070--Hb_004117_350 Hb_018202_030 Hb_018202_030 Hb_006649_070--Hb_018202_030 Hb_012146_030 Hb_012146_030 Hb_006649_070--Hb_012146_030 Hb_006132_070 Hb_006132_070 Hb_006649_070--Hb_006132_070 Hb_029610_010 Hb_029610_010 Hb_006649_070--Hb_029610_010 Hb_006054_050 Hb_006054_050 Hb_006649_070--Hb_006054_050 Hb_183086_050 Hb_183086_050 Hb_004117_350--Hb_183086_050 Hb_004117_350--Hb_012146_030 Hb_001579_240 Hb_001579_240 Hb_004117_350--Hb_001579_240 Hb_114310_110 Hb_114310_110 Hb_004117_350--Hb_114310_110 Hb_003780_070 Hb_003780_070 Hb_004117_350--Hb_003780_070 Hb_018202_030--Hb_012146_030 Hb_044187_010 Hb_044187_010 Hb_018202_030--Hb_044187_010 Hb_018202_030--Hb_006054_050 Hb_164804_010 Hb_164804_010 Hb_018202_030--Hb_164804_010 Hb_101832_010 Hb_101832_010 Hb_018202_030--Hb_101832_010 Hb_002217_260 Hb_002217_260 Hb_012146_030--Hb_002217_260 Hb_001951_180 Hb_001951_180 Hb_012146_030--Hb_001951_180 Hb_000087_140 Hb_000087_140 Hb_012146_030--Hb_000087_140 Hb_000702_080 Hb_000702_080 Hb_012146_030--Hb_000702_080 Hb_012146_030--Hb_006054_050 Hb_001080_090 Hb_001080_090 Hb_012146_030--Hb_001080_090 Hb_005433_010 Hb_005433_010 Hb_006132_070--Hb_005433_010 Hb_001085_050 Hb_001085_050 Hb_006132_070--Hb_001085_050 Hb_001401_080 Hb_001401_080 Hb_006132_070--Hb_001401_080 Hb_029695_110 Hb_029695_110 Hb_006132_070--Hb_029695_110 Hb_000243_200 Hb_000243_200 Hb_006132_070--Hb_000243_200 Hb_000072_070 Hb_000072_070 Hb_006132_070--Hb_000072_070 Hb_029610_010--Hb_114310_110 Hb_000928_010 Hb_000928_010 Hb_029610_010--Hb_000928_010 Hb_000608_170 Hb_000608_170 Hb_029610_010--Hb_000608_170 Hb_003349_040 Hb_003349_040 Hb_029610_010--Hb_003349_040 Hb_009178_070 Hb_009178_070 Hb_029610_010--Hb_009178_070 Hb_012545_060 Hb_012545_060 Hb_029610_010--Hb_012545_060 Hb_015026_080 Hb_015026_080 Hb_006054_050--Hb_015026_080 Hb_000753_200 Hb_000753_200 Hb_006054_050--Hb_000753_200 Hb_006788_160 Hb_006788_160 Hb_006054_050--Hb_006788_160 Hb_035755_010 Hb_035755_010 Hb_006054_050--Hb_035755_010 Hb_000130_260 Hb_000130_260 Hb_006054_050--Hb_000130_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.790589 0.0529755 0.243625 0 0.154229 0.106644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.436014 0.171405 0.102805 0.0926901 1.14032

CAGE analysis