Hb_006649_080

Information

Type -
Description -
Location Contig6649: 43952-47531
Sequence    

Annotation

kegg
ID rcu:RCOM_0301860
description hypothetical protein
nr
ID XP_012080215.1
description PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T0J0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0301860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53161: 43928-47726 , PASA_asmbl_53164: 45705-46327 , PASA_asmbl_53165: 36007-55846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006649_080 0.0 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
2 Hb_000742_250 0.108970581 - - Tubulin beta-6 chain [Gossypium arboreum]
3 Hb_185467_010 0.1222389886 - - -
4 Hb_033834_010 0.1241223469 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
5 Hb_000359_250 0.1310186308 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
6 Hb_003878_120 0.1316220825 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
7 Hb_004096_020 0.1316231397 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
8 Hb_026206_020 0.133008656 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
9 Hb_001245_070 0.1370967383 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
10 Hb_033187_050 0.1375088667 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
11 Hb_011030_010 0.1378348006 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
12 Hb_011639_050 0.1393291776 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001930_010 0.1401493783 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
14 Hb_009404_010 0.140333868 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
15 Hb_000627_080 0.1409833623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_003216_080 0.1416926692 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
17 Hb_017075_010 0.1418056954 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
18 Hb_000244_250 0.1436711727 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_004055_040 0.1437412361 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
20 Hb_000805_260 0.1444758918 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006649_080 Hb_006649_080 Hb_000742_250 Hb_000742_250 Hb_006649_080--Hb_000742_250 Hb_185467_010 Hb_185467_010 Hb_006649_080--Hb_185467_010 Hb_033834_010 Hb_033834_010 Hb_006649_080--Hb_033834_010 Hb_000359_250 Hb_000359_250 Hb_006649_080--Hb_000359_250 Hb_003878_120 Hb_003878_120 Hb_006649_080--Hb_003878_120 Hb_004096_020 Hb_004096_020 Hb_006649_080--Hb_004096_020 Hb_002400_270 Hb_002400_270 Hb_000742_250--Hb_002400_270 Hb_001846_060 Hb_001846_060 Hb_000742_250--Hb_001846_060 Hb_000742_250--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_000742_250--Hb_007786_010 Hb_000742_250--Hb_004096_020 Hb_024714_020 Hb_024714_020 Hb_185467_010--Hb_024714_020 Hb_000721_010 Hb_000721_010 Hb_185467_010--Hb_000721_010 Hb_004993_010 Hb_004993_010 Hb_185467_010--Hb_004993_010 Hb_000046_300 Hb_000046_300 Hb_185467_010--Hb_000046_300 Hb_001936_050 Hb_001936_050 Hb_185467_010--Hb_001936_050 Hb_002874_070 Hb_002874_070 Hb_185467_010--Hb_002874_070 Hb_005730_030 Hb_005730_030 Hb_033834_010--Hb_005730_030 Hb_175338_020 Hb_175338_020 Hb_033834_010--Hb_175338_020 Hb_033834_010--Hb_004096_020 Hb_001541_020 Hb_001541_020 Hb_033834_010--Hb_001541_020 Hb_000195_020 Hb_000195_020 Hb_033834_010--Hb_000195_020 Hb_002301_220 Hb_002301_220 Hb_033834_010--Hb_002301_220 Hb_003216_080 Hb_003216_080 Hb_000359_250--Hb_003216_080 Hb_003938_080 Hb_003938_080 Hb_000359_250--Hb_003938_080 Hb_000072_220 Hb_000072_220 Hb_000359_250--Hb_000072_220 Hb_020000_020 Hb_020000_020 Hb_000359_250--Hb_020000_020 Hb_001245_070 Hb_001245_070 Hb_000359_250--Hb_001245_070 Hb_011030_010 Hb_011030_010 Hb_000359_250--Hb_011030_010 Hb_000187_090 Hb_000187_090 Hb_003878_120--Hb_000187_090 Hb_003878_120--Hb_000742_250 Hb_000041_150 Hb_000041_150 Hb_003878_120--Hb_000041_150 Hb_000364_180 Hb_000364_180 Hb_003878_120--Hb_000364_180 Hb_153258_010 Hb_153258_010 Hb_003878_120--Hb_153258_010 Hb_046615_020 Hb_046615_020 Hb_004096_020--Hb_046615_020 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0004 9.52652 6.95421 3.92722 15.0478 20.802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94136 4.11451 19.8725 5.05192 7.41909

CAGE analysis