Hb_006663_070

Information

Type -
Description -
Location Contig6663: 83179-86172
Sequence    

Annotation

kegg
ID pop:POPTR_0006s29400g
description hypothetical protein
nr
ID XP_012076277.1
description PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
swissprot
ID Q1RIM1
description DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA PE=3 SV=1
trembl
ID A0A067KM90
description DNA topoisomerase OS=Jatropha curcas GN=JCGZ_06976 PE=3 SV=1
Gene Ontology
ID GO:0003677
description prokaryotic dna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53264: 83149-83823 , PASA_asmbl_53265: 83892-129449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_070 0.0 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
2 Hb_000679_150 0.0904181847 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
3 Hb_002601_130 0.0938302674 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
4 Hb_002092_090 0.0943987742 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
5 Hb_004619_050 0.1015367548 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
6 Hb_032458_010 0.1030947583 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
7 Hb_005679_050 0.1046422567 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000436_040 0.1068472282 - - PREDICTED: transportin-1 [Jatropha curcas]
9 Hb_000743_050 0.1085010624 - - unnamed protein product [Vitis vinifera]
10 Hb_025012_010 0.1087538451 - - PREDICTED: importin-4 [Vitis vinifera]
11 Hb_012180_040 0.1090640591 - - hypothetical protein VITISV_042517 [Vitis vinifera]
12 Hb_081879_030 0.1116324419 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
13 Hb_005608_030 0.1145139491 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
14 Hb_002027_270 0.1148428379 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_002600_140 0.1167987835 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
16 Hb_011716_020 0.1175658258 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
17 Hb_031866_060 0.1200900607 - - PREDICTED: uncharacterized protein LOC105642381 isoform X2 [Jatropha curcas]
18 Hb_002551_070 0.1201938233 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
19 Hb_007380_090 0.1204491737 - - -
20 Hb_039253_010 0.1207495304 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006663_070 Hb_006663_070 Hb_000679_150 Hb_000679_150 Hb_006663_070--Hb_000679_150 Hb_002601_130 Hb_002601_130 Hb_006663_070--Hb_002601_130 Hb_002092_090 Hb_002092_090 Hb_006663_070--Hb_002092_090 Hb_004619_050 Hb_004619_050 Hb_006663_070--Hb_004619_050 Hb_032458_010 Hb_032458_010 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_007380_090 Hb_007380_090 Hb_000679_150--Hb_007380_090 Hb_003363_010 Hb_003363_010 Hb_000679_150--Hb_003363_010 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030 Hb_000170_190 Hb_000170_190 Hb_002601_130--Hb_000170_190 Hb_002276_060 Hb_002276_060 Hb_002601_130--Hb_002276_060 Hb_002551_070 Hb_002551_070 Hb_002601_130--Hb_002551_070 Hb_008489_020 Hb_008489_020 Hb_002601_130--Hb_008489_020 Hb_009535_020 Hb_009535_020 Hb_002601_130--Hb_009535_020 Hb_025012_010 Hb_025012_010 Hb_002092_090--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_002092_090--Hb_042487_010 Hb_003711_040 Hb_003711_040 Hb_002092_090--Hb_003711_040 Hb_001943_010 Hb_001943_010 Hb_002092_090--Hb_001943_010 Hb_012180_040 Hb_012180_040 Hb_002092_090--Hb_012180_040 Hb_004619_050--Hb_032458_010 Hb_004447_060 Hb_004447_060 Hb_004619_050--Hb_004447_060 Hb_002027_270 Hb_002027_270 Hb_004619_050--Hb_002027_270 Hb_004619_050--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_004619_050--Hb_003428_070 Hb_000429_120 Hb_000429_120 Hb_004619_050--Hb_000429_120 Hb_005608_030 Hb_005608_030 Hb_032458_010--Hb_005608_030 Hb_032458_010--Hb_000429_120 Hb_001866_110 Hb_001866_110 Hb_032458_010--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_032458_010--Hb_000889_020 Hb_009117_030 Hb_009117_030 Hb_032458_010--Hb_009117_030 Hb_002493_020 Hb_002493_020 Hb_005679_050--Hb_002493_020 Hb_001700_040 Hb_001700_040 Hb_005679_050--Hb_001700_040 Hb_001617_060 Hb_001617_060 Hb_005679_050--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_005679_050--Hb_003966_030 Hb_067345_010 Hb_067345_010 Hb_005679_050--Hb_067345_010 Hb_005679_050--Hb_001691_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5395 5.48175 3.86252 6.23598 9.8018 31.7691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73746 4.11304 8.34524 8.99788 8.11357

CAGE analysis