Hb_006663_090

Information

Type -
Description -
Location Contig6663: 115411-117717
Sequence    

Annotation

kegg
ID mdm:103421172
description uncharacterized LOC103421172
nr
ID KJB66046.1
description hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2UDD9
description Gossypium raimondii chromosome 10, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_010G1255001 PE=4 SV=1
Gene Ontology
ID GO:0005694
description prokaryotic dna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53265: 83892-129449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_090 0.0 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
2 Hb_000825_030 0.10901088 - - zinc binding dehydrogenase, putative [Ricinus communis]
3 Hb_001386_140 0.1117025285 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_115477_010 0.1181913241 - - Protein dom-3, putative [Ricinus communis]
5 Hb_068014_010 0.1239428512 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
6 Hb_006487_060 0.1241632945 - - Defective in cullin neddylation protein, putative [Ricinus communis]
7 Hb_005679_070 0.1256261514 - - hypothetical protein M569_07741, partial [Genlisea aurea]
8 Hb_003371_170 0.1263055852 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001623_300 0.1277184341 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
10 Hb_005085_030 0.1304940293 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
11 Hb_106415_010 0.1319124772 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
12 Hb_010565_010 0.1334470651 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
13 Hb_128998_010 0.1340166969 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
14 Hb_168973_010 0.1370420225 - - -
15 Hb_001623_290 0.1398315187 - - unknown [Populus trichocarpa]
16 Hb_005023_030 0.142409778 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
17 Hb_007763_060 0.142455073 - - BnaA02g23510D [Brassica napus]
18 Hb_152554_010 0.1451702335 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
19 Hb_076875_020 0.1495516555 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_002974_050 0.1503975977 - - -

Gene co-expression network

sample Hb_006663_090 Hb_006663_090 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_038237_010 Hb_038237_010 Hb_000825_030--Hb_038237_010 Hb_000825_030--Hb_006487_060 Hb_106415_010 Hb_106415_010 Hb_000825_030--Hb_106415_010 Hb_000991_070 Hb_000991_070 Hb_000825_030--Hb_000991_070 Hb_152554_010 Hb_152554_010 Hb_000825_030--Hb_152554_010 Hb_010565_010 Hb_010565_010 Hb_001386_140--Hb_010565_010 Hb_005023_030 Hb_005023_030 Hb_001386_140--Hb_005023_030 Hb_002067_120 Hb_002067_120 Hb_001386_140--Hb_002067_120 Hb_001386_140--Hb_115477_010 Hb_054586_020 Hb_054586_020 Hb_001386_140--Hb_054586_020 Hb_115107_010 Hb_115107_010 Hb_115477_010--Hb_115107_010 Hb_168973_010 Hb_168973_010 Hb_115477_010--Hb_168973_010 Hb_007026_040 Hb_007026_040 Hb_115477_010--Hb_007026_040 Hb_115477_010--Hb_010565_010 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_068014_010--Hb_005679_070 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_068014_010--Hb_106415_010 Hb_006487_060--Hb_152554_010 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_000176_120 Hb_000176_120 Hb_006487_060--Hb_000176_120 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0274 8.76997 7.30015 40.6895 11.8697 83.9547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4093 14.2017 12.5569 9.51856 11.0128

CAGE analysis