Hb_006681_020

Information

Type -
Description -
Location Contig6681: 29958-35316
Sequence    

Annotation

kegg
ID rcu:RCOM_0850710
description peptidyl-prolyl cis-trans isomerase, putative
nr
ID XP_012081789.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
swissprot
ID Q9SSA5
description Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1
trembl
ID A0A067LA81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09615 PE=4 SV=1
Gene Ontology
ID GO:0009535
description peptidyl-prolyl cis-trans isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53319: 29945-35446
cDNA
(Sanger)
(ID:Location)		 032_K19.ab1: 30105-31360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006681_020 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
2 Hb_000768_120 0.0575673083 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
3 Hb_001999_260 0.0708291605 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
4 Hb_004855_070 0.0759305855 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
5 Hb_006583_030 0.0809136526 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
6 Hb_004117_150 0.0820846093 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
7 Hb_000009_510 0.0862667459 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
8 Hb_004208_090 0.0880121943 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_000062_480 0.0920058885 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
10 Hb_002495_090 0.0928557163 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
11 Hb_005488_190 0.0940168799 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_000302_230 0.1014215565 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004007_170 0.1020727658 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_000703_070 0.1066566593 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
15 Hb_137216_010 0.1104606782 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
16 Hb_007479_010 0.1112350837 - - Root phototropism protein, putative [Ricinus communis]
17 Hb_000134_040 0.1155532131 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
18 Hb_002485_050 0.1229660957 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
19 Hb_003470_100 0.1263155546 - - protein binding protein, putative [Ricinus communis]
20 Hb_007803_040 0.1263584366 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006681_020 Hb_006681_020 Hb_000768_120 Hb_000768_120 Hb_006681_020--Hb_000768_120 Hb_001999_260 Hb_001999_260 Hb_006681_020--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006681_020--Hb_004855_070 Hb_006583_030 Hb_006583_030 Hb_006681_020--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_000768_120--Hb_004855_070 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_002495_090 Hb_002495_090 Hb_000768_120--Hb_002495_090 Hb_004208_090 Hb_004208_090 Hb_000768_120--Hb_004208_090 Hb_000768_120--Hb_001999_260 Hb_001999_260--Hb_004208_090 Hb_001999_260--Hb_006583_030 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_000934_260 Hb_000934_260 Hb_001999_260--Hb_000934_260 Hb_004855_070--Hb_004208_090 Hb_004855_070--Hb_006583_030 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040 Hb_000302_230 Hb_000302_230 Hb_006583_030--Hb_000302_230 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010 Hb_004117_150--Hb_004208_090 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_004117_150--Hb_000768_120 Hb_000703_070 Hb_000703_070 Hb_004117_150--Hb_000703_070 Hb_000009_510--Hb_000302_230 Hb_002485_050 Hb_002485_050 Hb_000009_510--Hb_002485_050 Hb_137216_010 Hb_137216_010 Hb_000009_510--Hb_137216_010 Hb_000174_080 Hb_000174_080 Hb_000009_510--Hb_000174_080 Hb_000009_510--Hb_006583_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.77046 8.36323 94.6988 17.4895 5.01393 4.03368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31468 3.31119 1.52439 4.29569 79.948

CAGE analysis