Hb_006681_030

Information

Type -
Description -
Location Contig6681: 34877-40273
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10930g
description POPTRDRAFT_808881; kinase family protein
nr
ID XP_011007522.1
description PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID W9SJ94
description Serine/threonine-protein kinase HT1 OS=Morus notabilis GN=L484_008424 PE=4 SV=1
Gene Ontology
ID GO:0003676
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53322: 36428-39927 , PASA_asmbl_53323: 36056-37400
cDNA
(Sanger)
(ID:Location)		 032_K19r.ab1: 33325-35183

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006681_030 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
2 Hb_005523_050 0.1264469857 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
3 Hb_003881_020 0.131962506 - - PREDICTED: stellacyanin-like [Jatropha curcas]
4 Hb_000760_080 0.1411906322 - - mutt domain protein, putative [Ricinus communis]
5 Hb_003224_010 0.1446892836 - - -
6 Hb_134174_010 0.1487182762 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_007676_040 0.1514309708 - - cellulose synthase, putative [Ricinus communis]
8 Hb_083412_010 0.1524713218 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_000501_110 0.1530423523 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
10 Hb_000108_090 0.1581499493 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
11 Hb_032717_010 0.1588582025 - - unnamed protein product [Vitis vinifera]
12 Hb_000046_430 0.1596822107 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
13 Hb_002984_040 0.1620483031 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001345_010 0.1624373456 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
15 Hb_133151_010 0.1654695491 - - NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
16 Hb_000165_070 0.165675988 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
17 Hb_033312_050 0.1661006225 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
18 Hb_137272_010 0.166145094 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
19 Hb_000739_160 0.1670692209 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000189_160 0.1672993332 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]

Gene co-expression network

sample Hb_006681_030 Hb_006681_030 Hb_005523_050 Hb_005523_050 Hb_006681_030--Hb_005523_050 Hb_003881_020 Hb_003881_020 Hb_006681_030--Hb_003881_020 Hb_000760_080 Hb_000760_080 Hb_006681_030--Hb_000760_080 Hb_003224_010 Hb_003224_010 Hb_006681_030--Hb_003224_010 Hb_134174_010 Hb_134174_010 Hb_006681_030--Hb_134174_010 Hb_007676_040 Hb_007676_040 Hb_006681_030--Hb_007676_040 Hb_032717_010 Hb_032717_010 Hb_005523_050--Hb_032717_010 Hb_003842_010 Hb_003842_010 Hb_005523_050--Hb_003842_010 Hb_002811_020 Hb_002811_020 Hb_005523_050--Hb_002811_020 Hb_001345_010 Hb_001345_010 Hb_005523_050--Hb_001345_010 Hb_005523_050--Hb_003224_010 Hb_137272_010 Hb_137272_010 Hb_003881_020--Hb_137272_010 Hb_083412_010 Hb_083412_010 Hb_003881_020--Hb_083412_010 Hb_000567_060 Hb_000567_060 Hb_003881_020--Hb_000567_060 Hb_000482_070 Hb_000482_070 Hb_003881_020--Hb_000482_070 Hb_000501_110 Hb_000501_110 Hb_003881_020--Hb_000501_110 Hb_002984_040 Hb_002984_040 Hb_003881_020--Hb_002984_040 Hb_001048_100 Hb_001048_100 Hb_000760_080--Hb_001048_100 Hb_000024_130 Hb_000024_130 Hb_000760_080--Hb_000024_130 Hb_005568_050 Hb_005568_050 Hb_000760_080--Hb_005568_050 Hb_002503_050 Hb_002503_050 Hb_000760_080--Hb_002503_050 Hb_033312_050 Hb_033312_050 Hb_000760_080--Hb_033312_050 Hb_000731_210 Hb_000731_210 Hb_000760_080--Hb_000731_210 Hb_000189_160 Hb_000189_160 Hb_003224_010--Hb_000189_160 Hb_005496_170 Hb_005496_170 Hb_003224_010--Hb_005496_170 Hb_000046_430 Hb_000046_430 Hb_003224_010--Hb_000046_430 Hb_094148_010 Hb_094148_010 Hb_003224_010--Hb_094148_010 Hb_009554_030 Hb_009554_030 Hb_003224_010--Hb_009554_030 Hb_003224_010--Hb_002503_050 Hb_001300_180 Hb_001300_180 Hb_134174_010--Hb_001300_180 Hb_134174_010--Hb_002984_040 Hb_134174_010--Hb_003881_020 Hb_134174_010--Hb_000501_110 Hb_001634_030 Hb_001634_030 Hb_134174_010--Hb_001634_030 Hb_134174_010--Hb_137272_010 Hb_005542_040 Hb_005542_040 Hb_007676_040--Hb_005542_040 Hb_007676_040--Hb_001345_010 Hb_007676_040--Hb_000501_110 Hb_000108_090 Hb_000108_090 Hb_007676_040--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_007676_040--Hb_001634_080 Hb_000521_360 Hb_000521_360 Hb_007676_040--Hb_000521_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297269 8.09364 14.1327 4.18341 0.473521 0.735419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0449953 0.0423876 11.5907 6.32628

CAGE analysis