Hb_006683_010

Information

Type -
Description -
Location Contig6683: 3657-6656
Sequence    

Annotation

kegg
ID tcc:TCM_029039
description Glycosyl hydrolases family 32 protein isoform 1
nr
ID AFH77955.1
description cell wall invertase [Manihot esculenta]
swissprot
ID Q43866
description Beta-fructofuranosidase, insoluble isoenzyme CWINV1 OS=Arabidopsis thaliana GN=CWINV1 PE=1 SV=1
trembl
ID I0CL55
description Cell wall invertase OS=Manihot esculenta GN=CWINV4 PE=4 SV=1
Gene Ontology
ID GO:0004575
description beta- insoluble isoenzyme cwinv1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006683_010 0.0 - - cell wall invertase [Manihot esculenta]
2 Hb_002675_120 0.1773267424 - - DNA-repair protein xrcc1, putative [Ricinus communis]
3 Hb_000050_130 0.1837485698 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
4 Hb_001652_110 0.2076743816 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
5 Hb_008779_010 0.2241286845 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
6 Hb_008643_010 0.2286080648 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
7 Hb_000160_100 0.2408474187 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
8 Hb_054362_010 0.2428332364 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
9 Hb_127993_010 0.2547631368 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
10 Hb_000455_100 0.2624897733 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_001638_220 0.2791001282 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007125_010 0.2795348215 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_000574_550 0.2799812641 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
14 Hb_169574_010 0.2834210971 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
15 Hb_048874_010 0.2850890453 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
16 Hb_001956_030 0.2870291846 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
17 Hb_005799_040 0.2892479951 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
18 Hb_008246_050 0.2892788252 - - -
19 Hb_002849_150 0.2947053812 - - hypothetical protein JCGZ_14367 [Jatropha curcas]
20 Hb_002092_040 0.2961007861 - - PREDICTED: protein YLS3 [Jatropha curcas]

Gene co-expression network

sample Hb_006683_010 Hb_006683_010 Hb_002675_120 Hb_002675_120 Hb_006683_010--Hb_002675_120 Hb_000050_130 Hb_000050_130 Hb_006683_010--Hb_000050_130 Hb_001652_110 Hb_001652_110 Hb_006683_010--Hb_001652_110 Hb_008779_010 Hb_008779_010 Hb_006683_010--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_006683_010--Hb_008643_010 Hb_000160_100 Hb_000160_100 Hb_006683_010--Hb_000160_100 Hb_002675_120--Hb_000160_100 Hb_002675_120--Hb_000050_130 Hb_002675_120--Hb_001652_110 Hb_006683_030 Hb_006683_030 Hb_002675_120--Hb_006683_030 Hb_002849_150 Hb_002849_150 Hb_002675_120--Hb_002849_150 Hb_000050_130--Hb_001652_110 Hb_000050_130--Hb_008779_010 Hb_000050_130--Hb_008643_010 Hb_054362_010 Hb_054362_010 Hb_000050_130--Hb_054362_010 Hb_000065_050 Hb_000065_050 Hb_001652_110--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_001652_110--Hb_000574_550 Hb_005007_040 Hb_005007_040 Hb_001652_110--Hb_005007_040 Hb_012071_010 Hb_012071_010 Hb_001652_110--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_001652_110--Hb_012295_020 Hb_008779_010--Hb_008643_010 Hb_001638_220 Hb_001638_220 Hb_008779_010--Hb_001638_220 Hb_008779_010--Hb_054362_010 Hb_000455_100 Hb_000455_100 Hb_008779_010--Hb_000455_100 Hb_127993_010 Hb_127993_010 Hb_008779_010--Hb_127993_010 Hb_008643_010--Hb_001638_220 Hb_008643_010--Hb_054362_010 Hb_008643_010--Hb_000455_100 Hb_008643_010--Hb_127993_010 Hb_000160_100--Hb_006683_030 Hb_000160_100--Hb_002849_150 Hb_002774_010 Hb_002774_010 Hb_000160_100--Hb_002774_010 Hb_041184_010 Hb_041184_010 Hb_000160_100--Hb_041184_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0078022 0.00812118 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.213598 0.389125 0.039669

CAGE analysis