Hb_006683_020

Information

Type -
Description -
Location Contig6683: 9618-14276
Sequence    

Annotation

kegg
ID vvi:100267878
description nucleosome assembly protein 1;4-like
nr
ID XP_012068964.1
description PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
swissprot
ID Q70Z17
description Nucleosome assembly protein 1;3 OS=Nicotiana tabacum GN=NAP1;3 PE=1 SV=1
trembl
ID A0A067L0N1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24757 PE=3 SV=1
Gene Ontology
ID GO:0005634
description nucleosome assembly protein 1 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53325: 9665-14254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006683_020 0.0 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
2 Hb_001097_040 0.0828634893 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
3 Hb_016734_010 0.0863169295 - - PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Jatropha curcas]
4 Hb_019280_010 0.0931489437 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
5 Hb_000683_050 0.0951532839 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
6 Hb_000701_030 0.0965250401 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
7 Hb_005914_140 0.0975119056 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
8 Hb_000023_300 0.10038961 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
9 Hb_001811_170 0.1005751325 - - dynamin, putative [Ricinus communis]
10 Hb_001085_080 0.1018683568 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
11 Hb_000494_030 0.1065631575 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
12 Hb_005970_010 0.108153382 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
13 Hb_007416_070 0.1085494001 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
14 Hb_019280_020 0.1087625926 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
15 Hb_000173_130 0.1091523374 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
16 Hb_004030_060 0.1093691723 - - receptor protein kinase zmpk1, putative [Ricinus communis]
17 Hb_000152_700 0.1095205763 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
18 Hb_028077_020 0.1100298628 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001900_100 0.1103215975 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
20 Hb_000227_160 0.1158832521 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]

Gene co-expression network

sample Hb_006683_020 Hb_006683_020 Hb_001097_040 Hb_001097_040 Hb_006683_020--Hb_001097_040 Hb_016734_010 Hb_016734_010 Hb_006683_020--Hb_016734_010 Hb_019280_010 Hb_019280_010 Hb_006683_020--Hb_019280_010 Hb_000683_050 Hb_000683_050 Hb_006683_020--Hb_000683_050 Hb_000701_030 Hb_000701_030 Hb_006683_020--Hb_000701_030 Hb_005914_140 Hb_005914_140 Hb_006683_020--Hb_005914_140 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_004680_010 Hb_004680_010 Hb_016734_010--Hb_004680_010 Hb_000173_130 Hb_000173_130 Hb_016734_010--Hb_000173_130 Hb_002445_030 Hb_002445_030 Hb_016734_010--Hb_002445_030 Hb_009372_020 Hb_009372_020 Hb_016734_010--Hb_009372_020 Hb_027760_060 Hb_027760_060 Hb_016734_010--Hb_027760_060 Hb_004450_070 Hb_004450_070 Hb_019280_010--Hb_004450_070 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_000237_050 Hb_000237_050 Hb_019280_010--Hb_000237_050 Hb_004677_050 Hb_004677_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_007416_070 Hb_007416_070 Hb_000683_050--Hb_007416_070 Hb_000494_030 Hb_000494_030 Hb_000683_050--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_000683_050--Hb_004030_060 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_010390_010 Hb_010390_010 Hb_000683_050--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_000683_050--Hb_005854_040 Hb_000265_140 Hb_000265_140 Hb_000701_030--Hb_000265_140 Hb_021576_070 Hb_021576_070 Hb_000701_030--Hb_021576_070 Hb_000701_030--Hb_000494_030 Hb_000254_070 Hb_000254_070 Hb_000701_030--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000701_030--Hb_000003_310 Hb_000701_030--Hb_001097_040 Hb_000928_190 Hb_000928_190 Hb_005914_140--Hb_000928_190 Hb_001318_050 Hb_001318_050 Hb_005914_140--Hb_001318_050 Hb_004094_020 Hb_004094_020 Hb_005914_140--Hb_004094_020 Hb_132880_040 Hb_132880_040 Hb_005914_140--Hb_132880_040 Hb_005914_140--Hb_019280_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.28824 14.8518 9.3137 26.7549 4.28615 5.43279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72833 6.98944 7.85359 18.1701 12.4955

CAGE analysis