Hb_006683_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6683: 16353-24889
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06650g
description POPTRDRAFT_178418; hypothetical protein
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067JM58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006683_030 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_005896_010 0.1444382936 - - -
3 Hb_000160_100 0.2346134398 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
4 Hb_002774_040 0.2359104003 - - PREDICTED: annexin D1 [Jatropha curcas]
5 Hb_002675_120 0.2515793517 - - DNA-repair protein xrcc1, putative [Ricinus communis]
6 Hb_002656_010 0.2582795474 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
7 Hb_008749_090 0.2622897489 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
8 Hb_000067_010 0.2686083159 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
9 Hb_003517_010 0.2764976828 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
10 Hb_006916_190 0.2880399619 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_096811_010 0.2916808569 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
12 Hb_159198_010 0.3013210082 - - hypothetical protein VITISV_033829 [Vitis vinifera]
13 Hb_000216_030 0.3034798387 - - aldehyde oxidase, putative [Ricinus communis]
14 Hb_012788_010 0.3068967608 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_149515_010 0.3102660221 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
16 Hb_144004_010 0.3215790953 - - hypothetical protein JCGZ_01009 [Jatropha curcas]
17 Hb_001946_030 0.3267468318 - - grr1, plant, putative [Ricinus communis]
18 Hb_041184_010 0.327725444 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000649_180 0.3281760221 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
20 Hb_000475_050 0.3284335878 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_006683_030 Hb_006683_030 Hb_005896_010 Hb_005896_010 Hb_006683_030--Hb_005896_010 Hb_000160_100 Hb_000160_100 Hb_006683_030--Hb_000160_100 Hb_002774_040 Hb_002774_040 Hb_006683_030--Hb_002774_040 Hb_002675_120 Hb_002675_120 Hb_006683_030--Hb_002675_120 Hb_002656_010 Hb_002656_010 Hb_006683_030--Hb_002656_010 Hb_008749_090 Hb_008749_090 Hb_006683_030--Hb_008749_090 Hb_005896_010--Hb_002656_010 Hb_159198_010 Hb_159198_010 Hb_005896_010--Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_005896_010--Hb_000840_040 Hb_005896_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_005896_010--Hb_003517_010 Hb_000160_100--Hb_002675_120 Hb_006683_010 Hb_006683_010 Hb_000160_100--Hb_006683_010 Hb_002849_150 Hb_002849_150 Hb_000160_100--Hb_002849_150 Hb_002774_010 Hb_002774_010 Hb_000160_100--Hb_002774_010 Hb_041184_010 Hb_041184_010 Hb_000160_100--Hb_041184_010 Hb_000050_130 Hb_000050_130 Hb_002774_040--Hb_000050_130 Hb_002774_040--Hb_005896_010 Hb_002774_040--Hb_002675_120 Hb_002774_040--Hb_000160_100 Hb_167300_010 Hb_167300_010 Hb_002774_040--Hb_167300_010 Hb_002675_120--Hb_006683_010 Hb_002675_120--Hb_000050_130 Hb_001652_110 Hb_001652_110 Hb_002675_120--Hb_001652_110 Hb_002675_120--Hb_002849_150 Hb_149515_010 Hb_149515_010 Hb_002656_010--Hb_149515_010 Hb_000215_340 Hb_000215_340 Hb_002656_010--Hb_000215_340 Hb_002656_010--Hb_000840_040 Hb_001373_010 Hb_001373_010 Hb_002656_010--Hb_001373_010 Hb_002656_010--Hb_159198_010 Hb_008749_090--Hb_003517_010 Hb_008749_090--Hb_149515_010 Hb_006916_190 Hb_006916_190 Hb_008749_090--Hb_006916_190 Hb_001780_130 Hb_001780_130 Hb_008749_090--Hb_001780_130 Hb_000343_100 Hb_000343_100 Hb_008749_090--Hb_000343_100 Hb_000816_020 Hb_000816_020 Hb_008749_090--Hb_000816_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0588715 0.460741 0 0.0593813 0 0.122067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.80609 1.58336 0.487171

CAGE analysis