Hb_006683_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6683: 32960-37545
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A0A067JM58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53326: 32547-32998 , PASA_asmbl_53327: 33138-33513 , PASA_asmbl_53328: 33634-35407 , PASA_asmbl_53329: 35489-37493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006683_040 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_000932_070 0.0655503548 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
3 Hb_018301_010 0.0714749103 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
4 Hb_000340_110 0.0904890159 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
5 Hb_004218_090 0.0910871642 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_000061_490 0.0985993564 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
7 Hb_164010_070 0.1058148006 - - Paramyosin, putative [Ricinus communis]
8 Hb_000123_330 0.1075060348 - - hypothetical protein M569_14136, partial [Genlisea aurea]
9 Hb_007894_130 0.1076394479 - - hypothetical protein RCOM_0584960 [Ricinus communis]
10 Hb_127599_010 0.1088712058 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
11 Hb_093084_070 0.1096640451 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
12 Hb_000034_160 0.1113545992 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
13 Hb_000236_220 0.112784604 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
14 Hb_001141_370 0.116106143 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
15 Hb_001055_030 0.1189447543 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
16 Hb_004371_010 0.1212357881 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
17 Hb_003373_040 0.1214988264 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
18 Hb_012114_050 0.1218157374 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
19 Hb_001511_110 0.1229346723 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
20 Hb_012799_120 0.1230465293 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006683_040 Hb_006683_040 Hb_000932_070 Hb_000932_070 Hb_006683_040--Hb_000932_070 Hb_018301_010 Hb_018301_010 Hb_006683_040--Hb_018301_010 Hb_000340_110 Hb_000340_110 Hb_006683_040--Hb_000340_110 Hb_004218_090 Hb_004218_090 Hb_006683_040--Hb_004218_090 Hb_000061_490 Hb_000061_490 Hb_006683_040--Hb_000061_490 Hb_164010_070 Hb_164010_070 Hb_006683_040--Hb_164010_070 Hb_007894_130 Hb_007894_130 Hb_000932_070--Hb_007894_130 Hb_000932_070--Hb_000340_110 Hb_000932_070--Hb_018301_010 Hb_001511_110 Hb_001511_110 Hb_000932_070--Hb_001511_110 Hb_157966_010 Hb_157966_010 Hb_000932_070--Hb_157966_010 Hb_018301_010--Hb_004218_090 Hb_012114_050 Hb_012114_050 Hb_018301_010--Hb_012114_050 Hb_000264_080 Hb_000264_080 Hb_018301_010--Hb_000264_080 Hb_000120_420 Hb_000120_420 Hb_018301_010--Hb_000120_420 Hb_007193_110 Hb_007193_110 Hb_018301_010--Hb_007193_110 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_004218_090--Hb_000061_490 Hb_004218_090--Hb_000120_420 Hb_000061_490--Hb_000264_080 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_004410_070 Hb_004410_070 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_009771_100 Hb_009771_100 Hb_000061_490--Hb_009771_100 Hb_164010_070--Hb_000340_110 Hb_164010_070--Hb_144824_010 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_164010_070--Hb_000932_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6993 35.3283 8.58224 7.41239 13.4509 14.8122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.185 5.96507 7.74923 13.2829 2.61846

CAGE analysis