Hb_006692_030

Information

Type -
Description -
Location Contig6692: 32669-42804
Sequence    

Annotation

kegg
ID rcu:RCOM_0586990
description hypothetical protein
nr
ID XP_012070770.1
description PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53340: 33112-33273 , PASA_asmbl_53341: 32677-33104 , PASA_asmbl_53343: 37054-37340 , PASA_asmbl_53344: 38399-38727 , PASA_asmbl_53345: 38196-39724 , PASA_asmbl_53346: 40307-45064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006692_030 0.0 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
2 Hb_009133_010 0.0563683073 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
3 Hb_000032_570 0.0648594785 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
4 Hb_007218_080 0.0746220983 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
5 Hb_000889_020 0.0747333621 - - ribosome biogenesis protein brix, putative [Ricinus communis]
6 Hb_001789_240 0.074795525 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
7 Hb_000120_500 0.0785173139 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
8 Hb_076787_010 0.0801258385 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
9 Hb_033642_010 0.0804217109 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
10 Hb_001771_090 0.0815852696 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
11 Hb_063090_010 0.0816591616 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_003058_130 0.0817410312 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
13 Hb_039837_010 0.0823118074 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
14 Hb_003392_040 0.0839700978 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
15 Hb_001571_040 0.0844177822 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
16 Hb_002616_050 0.0858790125 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
17 Hb_028872_140 0.0858948954 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
18 Hb_003602_040 0.0876391364 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_005063_040 0.0891227667 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
20 Hb_000956_030 0.0894411614 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]

Gene co-expression network

sample Hb_006692_030 Hb_006692_030 Hb_009133_010 Hb_009133_010 Hb_006692_030--Hb_009133_010 Hb_000032_570 Hb_000032_570 Hb_006692_030--Hb_000032_570 Hb_007218_080 Hb_007218_080 Hb_006692_030--Hb_007218_080 Hb_000889_020 Hb_000889_020 Hb_006692_030--Hb_000889_020 Hb_001789_240 Hb_001789_240 Hb_006692_030--Hb_001789_240 Hb_000120_500 Hb_000120_500 Hb_006692_030--Hb_000120_500 Hb_009133_010--Hb_001789_240 Hb_004724_190 Hb_004724_190 Hb_009133_010--Hb_004724_190 Hb_063090_010 Hb_063090_010 Hb_009133_010--Hb_063090_010 Hb_005839_060 Hb_005839_060 Hb_009133_010--Hb_005839_060 Hb_009133_010--Hb_000889_020 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_003406_010 Hb_003406_010 Hb_007218_080--Hb_003406_010 Hb_002391_300 Hb_002391_300 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_000889_020--Hb_000179_020 Hb_001789_240--Hb_063090_010 Hb_001789_240--Hb_000373_240 Hb_002205_040 Hb_002205_040 Hb_001789_240--Hb_002205_040 Hb_001789_240--Hb_002391_300 Hb_000956_030 Hb_000956_030 Hb_000120_500--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_000120_500--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000120_500--Hb_000390_060 Hb_005883_050 Hb_005883_050 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_004198_010 Hb_004198_010 Hb_000120_500--Hb_004198_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5691 2.96145 2.61828 3.20399 8.22885 13.6521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4364 9.64439 6.13931 5.26161 3.8018

CAGE analysis