Hb_006693_010

Information

Type -
Description -
Location Contig6693: 10361-12118
Sequence    

Annotation

kegg
ID rcu:RCOM_1539890
description hypothetical protein
nr
ID XP_012065745.1
description PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4P4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26482 PE=4 SV=1
Gene Ontology
ID GO:0046872
description PREDICTED: uncharacterized protein LOC105628875

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53351: 9865-9996 , PASA_asmbl_53352: 10159-11602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006693_010 0.0 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
2 Hb_000522_160 0.076679393 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
3 Hb_001971_040 0.0787861069 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
4 Hb_000020_050 0.0877896459 - - PREDICTED: expansin-A6 [Jatropha curcas]
5 Hb_001348_100 0.0907734226 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
6 Hb_006810_040 0.0986393907 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_005332_030 0.0988788582 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000359_100 0.1017820488 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000345_230 0.1086420458 - - -
10 Hb_003935_040 0.1092705421 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
11 Hb_000538_290 0.1110630964 - - hypothetical protein RCOM_0303940 [Ricinus communis]
12 Hb_002686_320 0.1122118928 - - syntaxin, putative [Ricinus communis]
13 Hb_159809_040 0.1130444791 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002028_270 0.1131097542 - - Pectinesterase-1 precursor, putative [Ricinus communis]
15 Hb_059226_010 0.1139837902 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_000187_050 0.1153115473 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
17 Hb_003813_090 0.116569636 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
18 Hb_000977_190 0.1219023329 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000317_120 0.1222803565 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
20 Hb_002203_010 0.1226683602 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_006693_010 Hb_006693_010 Hb_000522_160 Hb_000522_160 Hb_006693_010--Hb_000522_160 Hb_001971_040 Hb_001971_040 Hb_006693_010--Hb_001971_040 Hb_000020_050 Hb_000020_050 Hb_006693_010--Hb_000020_050 Hb_001348_100 Hb_001348_100 Hb_006693_010--Hb_001348_100 Hb_006810_040 Hb_006810_040 Hb_006693_010--Hb_006810_040 Hb_005332_030 Hb_005332_030 Hb_006693_010--Hb_005332_030 Hb_000522_160--Hb_006810_040 Hb_000522_160--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000522_160--Hb_159809_040 Hb_000522_160--Hb_001971_040 Hb_000522_160--Hb_001348_100 Hb_001971_040--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_001971_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_001971_040--Hb_089140_070 Hb_010080_050 Hb_010080_050 Hb_001971_040--Hb_010080_050 Hb_001971_040--Hb_000020_050 Hb_003935_040 Hb_003935_040 Hb_000020_050--Hb_003935_040 Hb_000345_230 Hb_000345_230 Hb_000020_050--Hb_000345_230 Hb_000020_050--Hb_001348_100 Hb_001141_440 Hb_001141_440 Hb_000020_050--Hb_001141_440 Hb_001348_100--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_001348_100--Hb_000538_290 Hb_001348_100--Hb_006810_040 Hb_000297_210 Hb_000297_210 Hb_001348_100--Hb_000297_210 Hb_006810_040--Hb_002028_270 Hb_006810_040--Hb_159809_040 Hb_006810_040--Hb_089140_070 Hb_006810_040--Hb_005332_030 Hb_005332_030--Hb_159809_040 Hb_000977_190 Hb_000977_190 Hb_005332_030--Hb_000977_190 Hb_003656_080 Hb_003656_080 Hb_005332_030--Hb_003656_080 Hb_001263_030 Hb_001263_030 Hb_005332_030--Hb_001263_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147297 0.790154 14.4471 15.9817 0 0.0495278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.170273 0.066925 0.237818 2.182 2.50326

CAGE analysis