Hb_006693_020

Information

Type -
Description -
Location Contig6693: 46026-47572
Sequence    

Annotation

kegg
ID rcu:RCOM_1202600
description Frataxin, mitochondrial precursor, putative
nr
ID XP_012479773.1
description PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
swissprot
ID Q9ZR07
description Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=1 SV=2
trembl
ID A0A0D2SKT2
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G207400 PE=4 SV=1
Gene Ontology
ID GO:0008199
description mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53355: 46049-48652 , PASA_asmbl_53357: 46458-47449 , PASA_asmbl_53358: 47111-47330 , PASA_asmbl_53359: 47538-47691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006693_020 0.0 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
2 Hb_000390_300 0.055091305 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
3 Hb_000431_170 0.0619087549 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
4 Hb_000331_200 0.0677437301 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
5 Hb_004108_070 0.0680139657 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
6 Hb_000465_390 0.0717225994 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
7 Hb_000317_390 0.0717348045 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
8 Hb_001140_370 0.071936514 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
9 Hb_000005_090 0.0729414167 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
10 Hb_000081_160 0.0756298738 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
11 Hb_002534_150 0.0764060262 - - catalytic, putative [Ricinus communis]
12 Hb_001341_150 0.0767042815 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
13 Hb_002078_140 0.077312405 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
14 Hb_003435_020 0.0786493889 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000221_160 0.08157159 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
16 Hb_028396_010 0.0818047022 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
17 Hb_000045_310 0.0821598903 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
18 Hb_000059_370 0.0827739826 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
19 Hb_006615_240 0.0836811489 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
20 Hb_002171_060 0.0844547444 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006693_020 Hb_006693_020 Hb_000390_300 Hb_000390_300 Hb_006693_020--Hb_000390_300 Hb_000431_170 Hb_000431_170 Hb_006693_020--Hb_000431_170 Hb_000331_200 Hb_000331_200 Hb_006693_020--Hb_000331_200 Hb_004108_070 Hb_004108_070 Hb_006693_020--Hb_004108_070 Hb_000465_390 Hb_000465_390 Hb_006693_020--Hb_000465_390 Hb_000317_390 Hb_000317_390 Hb_006693_020--Hb_000317_390 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_006615_240 Hb_006615_240 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_000948_160 Hb_000948_160 Hb_000431_170--Hb_000948_160 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_001703_060 Hb_001703_060 Hb_000331_200--Hb_001703_060 Hb_000331_200--Hb_000317_390 Hb_000331_200--Hb_004108_070 Hb_001140_370 Hb_001140_370 Hb_000331_200--Hb_001140_370 Hb_000221_160 Hb_000221_160 Hb_000331_200--Hb_000221_160 Hb_005731_050 Hb_005731_050 Hb_004108_070--Hb_005731_050 Hb_004108_070--Hb_000317_390 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_002375_070 Hb_002375_070 Hb_004108_070--Hb_002375_070 Hb_001386_040 Hb_001386_040 Hb_000465_390--Hb_001386_040 Hb_000465_390--Hb_000431_170 Hb_001863_430 Hb_001863_430 Hb_000465_390--Hb_001863_430 Hb_000529_030 Hb_000529_030 Hb_000465_390--Hb_000529_030 Hb_000465_390--Hb_000948_160 Hb_152784_010 Hb_152784_010 Hb_000317_390--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000317_390--Hb_001318_250 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.40247 4.24977 6.79546 10.5698 8.64675 6.83839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.655 17.1558 8.02781 7.47466 6.02332

CAGE analysis