Hb_006694_020

Information

Type -
Description -
Location Contig6694: 7609-10865
Sequence    

Annotation

kegg
ID cic:CICLE_v10003317mg
description hypothetical protein
nr
ID XP_009625132.1
description PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
swissprot
ID Q8L7G0
description Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2
trembl
ID M8CTG9
description Auxin response factor OS=Aegilops tauschii GN=F775_27540 PE=3 SV=1
Gene Ontology
ID GO:0006355
description auxin response factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53363: 8155-9060 , PASA_asmbl_53364: 7665-9060 , PASA_asmbl_53365: 7491-8005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006694_020 0.0 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
2 Hb_004837_030 0.0957488073 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
3 Hb_000030_180 0.1175757083 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
4 Hb_007763_040 0.1186968797 - - -
5 Hb_001234_080 0.1217334589 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
6 Hb_000679_050 0.1253042054 - - Alba DNA/RNA-binding protein [Theobroma cacao]
7 Hb_009694_010 0.1321121188 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000714_030 0.1363097989 - - Nucleosome assembly [Gossypium arboreum]
9 Hb_006360_030 0.1366182918 - - -
10 Hb_028227_020 0.1374273039 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
11 Hb_001348_180 0.1383668452 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
12 Hb_001476_070 0.1414607174 - - MinE protein [Manihot esculenta]
13 Hb_024682_010 0.1419433541 - - sterol isomerase, putative [Ricinus communis]
14 Hb_001157_020 0.1420240238 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
15 Hb_163950_030 0.142193384 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
16 Hb_004619_080 0.144863341 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
17 Hb_000120_760 0.1452474129 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
18 Hb_001959_070 0.1460812038 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
19 Hb_000887_020 0.1463890684 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
20 Hb_000160_060 0.1466919903 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_006694_020 Hb_006694_020 Hb_004837_030 Hb_004837_030 Hb_006694_020--Hb_004837_030 Hb_000030_180 Hb_000030_180 Hb_006694_020--Hb_000030_180 Hb_007763_040 Hb_007763_040 Hb_006694_020--Hb_007763_040 Hb_001234_080 Hb_001234_080 Hb_006694_020--Hb_001234_080 Hb_000679_050 Hb_000679_050 Hb_006694_020--Hb_000679_050 Hb_009694_010 Hb_009694_010 Hb_006694_020--Hb_009694_010 Hb_004837_030--Hb_009694_010 Hb_163950_030 Hb_163950_030 Hb_004837_030--Hb_163950_030 Hb_007632_030 Hb_007632_030 Hb_004837_030--Hb_007632_030 Hb_028227_020 Hb_028227_020 Hb_004837_030--Hb_028227_020 Hb_002893_070 Hb_002893_070 Hb_004837_030--Hb_002893_070 Hb_001348_180 Hb_001348_180 Hb_004837_030--Hb_001348_180 Hb_000030_180--Hb_001234_080 Hb_000030_180--Hb_009694_010 Hb_000030_180--Hb_004837_030 Hb_004096_090 Hb_004096_090 Hb_000030_180--Hb_004096_090 Hb_000030_180--Hb_028227_020 Hb_002112_020 Hb_002112_020 Hb_000030_180--Hb_002112_020 Hb_000670_020 Hb_000670_020 Hb_007763_040--Hb_000670_020 Hb_003683_050 Hb_003683_050 Hb_007763_040--Hb_003683_050 Hb_010368_020 Hb_010368_020 Hb_007763_040--Hb_010368_020 Hb_005016_090 Hb_005016_090 Hb_007763_040--Hb_005016_090 Hb_000714_030 Hb_000714_030 Hb_007763_040--Hb_000714_030 Hb_001564_130 Hb_001564_130 Hb_007763_040--Hb_001564_130 Hb_001234_080--Hb_028227_020 Hb_000960_060 Hb_000960_060 Hb_001234_080--Hb_000960_060 Hb_001489_060 Hb_001489_060 Hb_001234_080--Hb_001489_060 Hb_001234_080--Hb_009694_010 Hb_001512_060 Hb_001512_060 Hb_001234_080--Hb_001512_060 Hb_001234_080--Hb_001564_130 Hb_000679_050--Hb_000030_180 Hb_001329_290 Hb_001329_290 Hb_000679_050--Hb_001329_290 Hb_000265_240 Hb_000265_240 Hb_000679_050--Hb_000265_240 Hb_000679_050--Hb_001234_080 Hb_004449_170 Hb_004449_170 Hb_000679_050--Hb_004449_170 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_009694_010--Hb_004096_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15462 0.20957 1.31334 0.865572 1.80514 1.6965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84663 2.41997 0.583121 0.28307 1.2941

CAGE analysis