Hb_006698_050

Information

Type -
Description -
Location Contig6698: 38848-41896
Sequence    

Annotation

kegg
ID rcu:RCOM_0633810
description Beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002519718.1
description Beta-glucosidase, putative [Ricinus communis]
swissprot
ID Q9LJN4
description Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2
trembl
ID B9S149
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0633810 PE=4 SV=1
Gene Ontology
ID GO:0008422
description beta-xylosidase alpha-l-arabinofuranosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53388: 39150-39585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006698_050 0.0 - - Beta-glucosidase, putative [Ricinus communis]
2 Hb_000347_500 0.2063524561 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
3 Hb_098546_010 0.221193289 - - thioredoxin-like family protein [Hevea brasiliensis]
4 Hb_087762_010 0.2489104893 - - thioredoxin-like family protein [Hevea brasiliensis]
5 Hb_000243_280 0.2511271004 - - -
6 Hb_000078_180 0.2532487576 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
7 Hb_000326_030 0.254641402 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
8 Hb_000270_560 0.2546591447 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
9 Hb_052764_050 0.2667533616 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
10 Hb_001288_080 0.267468501 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
11 Hb_001635_080 0.2687102726 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
12 Hb_001060_110 0.2715177099 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
13 Hb_000261_490 0.2742696376 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
14 Hb_003297_010 0.2771963759 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
15 Hb_155599_010 0.2790247608 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_001828_200 0.2792675485 - - ribosomal protein L13 [Populus trichocarpa]
17 Hb_003747_040 0.2800460257 - - -
18 Hb_012114_060 0.280118512 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
19 Hb_006807_050 0.280981052 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
20 Hb_134951_010 0.2825393554 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]

Gene co-expression network

sample Hb_006698_050 Hb_006698_050 Hb_000347_500 Hb_000347_500 Hb_006698_050--Hb_000347_500 Hb_098546_010 Hb_098546_010 Hb_006698_050--Hb_098546_010 Hb_087762_010 Hb_087762_010 Hb_006698_050--Hb_087762_010 Hb_000243_280 Hb_000243_280 Hb_006698_050--Hb_000243_280 Hb_000078_180 Hb_000078_180 Hb_006698_050--Hb_000078_180 Hb_000326_030 Hb_000326_030 Hb_006698_050--Hb_000326_030 Hb_000347_500--Hb_000326_030 Hb_000415_060 Hb_000415_060 Hb_000347_500--Hb_000415_060 Hb_000939_010 Hb_000939_010 Hb_000347_500--Hb_000939_010 Hb_000270_560 Hb_000270_560 Hb_000347_500--Hb_000270_560 Hb_001749_010 Hb_001749_010 Hb_000347_500--Hb_001749_010 Hb_002045_140 Hb_002045_140 Hb_098546_010--Hb_002045_140 Hb_000268_010 Hb_000268_010 Hb_098546_010--Hb_000268_010 Hb_082407_010 Hb_082407_010 Hb_098546_010--Hb_082407_010 Hb_005511_100 Hb_005511_100 Hb_098546_010--Hb_005511_100 Hb_007333_010 Hb_007333_010 Hb_098546_010--Hb_007333_010 Hb_000891_040 Hb_000891_040 Hb_087762_010--Hb_000891_040 Hb_003297_010 Hb_003297_010 Hb_087762_010--Hb_003297_010 Hb_155375_010 Hb_155375_010 Hb_087762_010--Hb_155375_010 Hb_002157_190 Hb_002157_190 Hb_087762_010--Hb_002157_190 Hb_002253_040 Hb_002253_040 Hb_087762_010--Hb_002253_040 Hb_007765_010 Hb_007765_010 Hb_087762_010--Hb_007765_010 Hb_000243_280--Hb_155375_010 Hb_003747_040 Hb_003747_040 Hb_000243_280--Hb_003747_040 Hb_000510_090 Hb_000510_090 Hb_000243_280--Hb_000510_090 Hb_000347_340 Hb_000347_340 Hb_000243_280--Hb_000347_340 Hb_001976_050 Hb_001976_050 Hb_000243_280--Hb_001976_050 Hb_000094_020 Hb_000094_020 Hb_000243_280--Hb_000094_020 Hb_004109_200 Hb_004109_200 Hb_000078_180--Hb_004109_200 Hb_000175_450 Hb_000175_450 Hb_000078_180--Hb_000175_450 Hb_000483_350 Hb_000483_350 Hb_000078_180--Hb_000483_350 Hb_000798_060 Hb_000798_060 Hb_000078_180--Hb_000798_060 Hb_000085_270 Hb_000085_270 Hb_000078_180--Hb_000085_270 Hb_001288_080 Hb_001288_080 Hb_000078_180--Hb_001288_080 Hb_000326_030--Hb_000415_060 Hb_000326_030--Hb_001749_010 Hb_001606_080 Hb_001606_080 Hb_000326_030--Hb_001606_080 Hb_151628_010 Hb_151628_010 Hb_000326_030--Hb_151628_010 Hb_129722_010 Hb_129722_010 Hb_000326_030--Hb_129722_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0781709 0.0503317 0.0193189 0.0124963 0 0.0606038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0187255 0.0442038 0.0280575 0.00585351 0

CAGE analysis